U.S. flag

An official website of the United States government

NM_000038.6(APC):c.7484C>T (p.Thr2495Ile) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 19, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004033315.1

Allele description [Variation Report for NM_000038.6(APC):c.7484C>T (p.Thr2495Ile)]

NM_000038.6(APC):c.7484C>T (p.Thr2495Ile)

Gene:
APC:APC regulator of WNT signaling pathway [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q22.2
Genomic location:
Preferred name:
NM_000038.6(APC):c.7484C>T (p.Thr2495Ile)
HGVS:
  • NC_000005.10:g.112843078C>T
  • NG_008481.4:g.155558C>T
  • NM_000038.6:c.7484C>TMANE SELECT
  • NM_001127510.3:c.7484C>T
  • NM_001127511.3:c.7430C>T
  • NM_001354895.2:c.7484C>T
  • NM_001354896.2:c.7538C>T
  • NM_001354897.2:c.7514C>T
  • NM_001354898.2:c.7409C>T
  • NM_001354899.2:c.7400C>T
  • NM_001354900.2:c.7361C>T
  • NM_001354901.2:c.7307C>T
  • NM_001354902.2:c.7211C>T
  • NM_001354903.2:c.7181C>T
  • NM_001354904.2:c.7106C>T
  • NM_001354905.2:c.7004C>T
  • NM_001354906.2:c.6635C>T
  • NP_000029.2:p.Thr2495Ile
  • NP_001120982.1:p.Thr2495Ile
  • NP_001120983.2:p.Thr2477Ile
  • NP_001341824.1:p.Thr2495Ile
  • NP_001341825.1:p.Thr2513Ile
  • NP_001341826.1:p.Thr2505Ile
  • NP_001341827.1:p.Thr2470Ile
  • NP_001341828.1:p.Thr2467Ile
  • NP_001341829.1:p.Thr2454Ile
  • NP_001341830.1:p.Thr2436Ile
  • NP_001341831.1:p.Thr2404Ile
  • NP_001341832.1:p.Thr2394Ile
  • NP_001341833.1:p.Thr2369Ile
  • NP_001341834.1:p.Thr2335Ile
  • NP_001341835.1:p.Thr2212Ile
  • LRG_130:g.155558C>T
  • NC_000005.9:g.112178775C>T
  • NM_000038.5:c.7484C>T
Protein change:
T2212I
Links:
dbSNP: rs1766490452
NCBI 1000 Genomes Browser:
rs1766490452
Molecular consequence:
  • NM_000038.6:c.7484C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127510.3:c.7484C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127511.3:c.7430C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354895.2:c.7484C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354896.2:c.7538C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354897.2:c.7514C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354898.2:c.7409C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354899.2:c.7400C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354900.2:c.7361C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354901.2:c.7307C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354902.2:c.7211C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354903.2:c.7181C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354904.2:c.7106C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354905.2:c.7004C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354906.2:c.6635C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005034893Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Jan 19, 2024) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV005034893.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.T2495I variant (also known as c.7484C>T), located in coding exon 15 of the APC gene, results from a C to T substitution at nucleotide position 7484. The threonine at codon 2495 is replaced by isoleucine, an amino acid with similar properties. This amino acid position is conserved. In addition, in silico predictors for this gene do not accurately predict pathogenicity. Based on the available evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024