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NM_003104.6(SORD):c.757del (p.Ala253fs) AND Neuromuscular disease

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 27, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004017799.2

Allele description [Variation Report for NM_003104.6(SORD):c.757del (p.Ala253fs)]

NM_003104.6(SORD):c.757del (p.Ala253fs)

Gene:
SORD:sorbitol dehydrogenase [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
15q21.1
Genomic location:
Preferred name:
NM_003104.6(SORD):c.757del (p.Ala253fs)
Other names:
p.A253Qfs*27; p.Ala253Glnfs*27
HGVS:
  • NC_000015.10:g.45069023del
  • NM_003104.6:c.757delMANE SELECT
  • NP_003095.2:p.Ala253fs
  • NC_000015.10:g.45069023delG
  • NC_000015.9:g.45361221del
  • NM_003104.5:c.757del
  • NM_003104.5:c.757delG
  • NM_003104.6:c.757delGMANE SELECT
  • NR_034039.2:n.931del
Protein change:
A253fs
Links:
OMIM: 182500.0001; dbSNP: rs55901542
NCBI 1000 Genomes Browser:
rs55901542
Molecular consequence:
  • NM_003104.6:c.757del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NR_034039.2:n.931del - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Functional consequence:
protein truncation [Variation Ontology: 0015]

Condition(s)

Name:
Neuromuscular disease
Synonyms:
Neuromuscular Diseases; Neuromuscular disorder; Neuromyopathy
Identifiers:
MONDO: MONDO:0019056; MeSH: D009468; MedGen: C0027868

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004848480Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jan 27, 2021)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Biallelic SORD pathogenic variants cause Chinese patients with distal hereditary motor neuropathy.

Dong HL, Li JQ, Liu GL, Yu H, Wu ZY.

NPJ Genom Med. 2021 Jan 4;6(1):1. doi: 10.1038/s41525-020-00165-6.

PubMed [citation]
PMID:
33397963
PMCID:
PMC7782788

Biallelic mutations in SORD cause a common and potentially treatable hereditary neuropathy with implications for diabetes.

Cortese A, Zhu Y, Rebelo AP, Negri S, Courel S, Abreu L, Bacon CJ, Bai Y, Bis-Brewer DM, Bugiardini E, Buglo E, Danzi MC, Feely SME, Athanasiou-Fragkouli A, Haridy NA; Inherited Neuropathy Consortium., Isasi R, Khan A, LaurĂ  M, Magri S, Pipis M, Pisciotta C, et al.

Nat Genet. 2020 May;52(5):473-481. doi: 10.1038/s41588-020-0615-4. Epub 2020 May 4. Erratum in: Nat Genet. 2020 Jun;52(6):640. doi: 10.1038/s41588-020-0649-7.

PubMed [citation]
PMID:
32367058
PMCID:
PMC8353599
See all PubMed Citations (3)

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV004848480.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

The p.Ala253GlnfsX27 variant in SORD has been reported in European, East Asian, and Egyptian individuals with clinical diagnoses of Charcot-Marie-Tooth disease 2 or distal hereditary neuropathy, all of whom were homozygous or also carried a second SORD variant. This variant also segregated with disease in 7 affected individuals from 6 families (Cortese 2020, PMID: 32367058; Dong 2021, PMID: 33397963). The p.Ala253GlnfsX27 variant has been identified in 0.06% (15/24486) of African chromosomes by gnomAD (http://gnomad.broadinstitute.org), and has also been reported in ClinVar (Variation ID: 929258). This variant is predicted to cause a frameshift, which alters the protein’s amino acid sequence beginning at position 253 and leads to a premature termination codon 27 amino acids downstream. This alteration is then predicted to lead to a truncated or absent protein. Loss of function of the SORD gene is strongly associated with autosomal recessive sorbitol dehydrogenase deficiency with peripheral neuropathy. In vitro functional studies support an impact on protein function (Cortese 2020, PMID: 32367058; Dong 2021, PMID: 33397963). In summary, this variant meets criteria to be classified as pathogenic for autosomal recessive sorbitol dehydrogenase deficiency with peripheral neuropathy. ACMG/AMP Criteria applied: PVS1_Strong, PP1_Strong, PM3, PS3_Moderate.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024