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NM_000527.5(LDLR):c.1529C>T (p.Thr510Met) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 5, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004017558.1

Allele description [Variation Report for NM_000527.5(LDLR):c.1529C>T (p.Thr510Met)]

NM_000527.5(LDLR):c.1529C>T (p.Thr510Met)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.1529C>T (p.Thr510Met)
HGVS:
  • NC_000019.10:g.11113705C>T
  • NG_009060.1:g.29325C>T
  • NM_000527.5:c.1529C>TMANE SELECT
  • NM_001195798.2:c.1529C>T
  • NM_001195799.2:c.1406C>T
  • NM_001195800.2:c.1025C>T
  • NM_001195803.2:c.1148C>T
  • NP_000518.1:p.Thr510Met
  • NP_000518.1:p.Thr510Met
  • NP_001182727.1:p.Thr510Met
  • NP_001182728.1:p.Thr469Met
  • NP_001182729.1:p.Thr342Met
  • NP_001182732.1:p.Thr383Met
  • LRG_274t1:c.1529C>T
  • LRG_274:g.29325C>T
  • NC_000019.9:g.11224381C>T
  • NM_000527.4(LDLR):c.1529C>T
  • NM_000527.4:c.1529C>T
  • c.1529C>T
Protein change:
T342M
Links:
LDLR-LOVD, British Heart Foundation: LDLR_000900; dbSNP: rs755154048
NCBI 1000 Genomes Browser:
rs755154048
Molecular consequence:
  • NM_000527.5:c.1529C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195798.2:c.1529C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195799.2:c.1406C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195800.2:c.1025C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195803.2:c.1148C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004848123Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain Significance
(Apr 5, 2019)
germlineclinical testing

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Molecular genetic analysis of 1053 Danish individuals with clinical signs of familial hypercholesterolemia.

Brusgaard K, Jordan P, Hansen H, Hansen AB, Hørder M.

Clin Genet. 2006 Mar;69(3):277-83.

PubMed [citation]
PMID:
16542394

Application of molecular genetics for diagnosing familial hypercholesterolemia in Norway: results from a family-based screening program.

Leren TP, Manshaus T, Skovholt U, Skodje T, Nossen IE, Teie C, Sørensen S, Bakken KS.

Semin Vasc Med. 2004 Feb;4(1):75-85. Review.

PubMed [citation]
PMID:
15199436
See all PubMed Citations (4)

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV004848123.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (4)

Description

The p.Thr510Met variant in LDLR has been reported in 4 individuals with hypercholesterolemia (Lered 2004, Brusgaard 2006, Tichy 2012) and has also been reported in ClinVar (Variation ID# 251886). This variant has also been identified in 1/33582 Latino chromosomes by the Genome Aggregation Database (GnomAD, http://gnomad.broadinstitute.org; dbSNP rs755154048). Computational prediction tools and conservation analysis do not provide strong support for or against an impact to the protein. In summary, the clinical significance of the p.Thr510Met variant is uncertain. The ACMG/AMP Criteria applied: PM2, PS4_Supporting.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024