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NM_000388.4(CASR):c.661C>T (p.Pro221Ser) AND Autosomal dominant hypocalcemia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Feb 1, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003994928.1

Allele description [Variation Report for NM_000388.4(CASR):c.661C>T (p.Pro221Ser)]

NM_000388.4(CASR):c.661C>T (p.Pro221Ser)

Gene:
CASR:calcium sensing receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q21.1
Genomic location:
Preferred name:
NM_000388.4(CASR):c.661C>T (p.Pro221Ser)
HGVS:
  • NC_000003.12:g.122261696C>T
  • NG_009058.2:g.83029C>T
  • NM_000388.4:c.661C>TMANE SELECT
  • NM_001178065.2:c.661C>T
  • NP_000379.3:p.Pro221Ser
  • NP_001171536.2:p.Pro221Ser
  • NC_000003.11:g.121980543C>T
Protein change:
P221S
Molecular consequence:
  • NM_000388.4:c.661C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001178065.2:c.661C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Autosomal dominant hypocalcemia
Identifiers:
MONDO: MONDO:0018543; MedGen: C4048195; Orphanet: 428; OMIM: PS601198

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004813571Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Pathogenic
(Feb 1, 2024)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Calcium-sensing receptor mutations in familial hypocalciuric hypercalcaemia with recurrent pancreatitis.

Pearce SH, Wooding C, Davies M, Tollefsen SE, Whyte MP, Thakker RV.

Clin Endocrinol (Oxf). 1996 Dec;45(6):675-80.

PubMed [citation]
PMID:
9039332

Functional characterization of calcium-sensing receptor mutations expressed in human embryonic kidney cells.

Pearce SH, Bai M, Quinn SJ, Kifor O, Brown EM, Thakker RV.

J Clin Invest. 1996 Oct 15;98(8):1860-6.

PubMed [citation]
PMID:
8878438
PMCID:
PMC507626

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV004813571.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)

Description

Variant summary: CASR c.661C>T (p.Pro221Ser) results in a non-conservative amino acid change located in the Receptor, ligand binding region (IPR001828) of the encoded protein sequence. Three of five in-silico tools predict a damaging effect of the variant on protein function. The variant was absent in 250832 control chromosomes. c.661C>T has been reported in the literature in multiple individuals from a large family with familial hypocalciuric hypercalcaemia with recurrent pancreatitis and segregated with disease (example, Pearce_1996). These data indicate that the variant is very likely to be associated with Autosomal Dominant Hypocalcemia. At least one publication reports experimental evidence evaluating an impact on protein function. The most pronounced variant effect results in about twice higher EC50[Ca2+]o of WT CASR in HEK cells (Pearce_1996). The following publications have been ascertained in the context of this evaluation (PMID: 9039332, 8878438). No submitters have cited clinical-significance assessments for this variant to ClinVar. Based on the evidence outlined above, the variant was classified as pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 20, 2024