NM_004959.5(NR5A1):c.31G>A (p.Glu11Lys) AND See cases

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Sep 1, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003991623.1

Allele description [Variation Report for NM_004959.5(NR5A1):c.31G>A (p.Glu11Lys)]

NM_004959.5(NR5A1):c.31G>A (p.Glu11Lys)

Gene:

NR5A1:nuclear receptor subfamily 5 group A member 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

9q33.3

Genomic location:

Preferred name:

NM_004959.5(NR5A1):c.31G>A (p.Glu11Lys)

HGVS:

NC_000009.12:g.124503365C>T
NG_008176.1:g.9056G>A
NG_051350.2:g.9C>T
NM_004959.5:c.31G>AMANE SELECT
NP_004950.2:p.Glu11Lys
NC_000009.11:g.127265644C>T

Protein change:

E11K

Molecular consequence:

NM_004959.5:c.31G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: See cases [See the Variation display for details]
Identifiers:

Recent activity

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Homo sapiens IGF like family receptor 1 (IGFLR1), transcript variant 6, non-codi...
Homo sapiens IGF like family receptor 1 (IGFLR1), transcript variant 6, non-coding RNA
gi|1676452553|ref|NR_144338.2|

Nucleotide
Mus musculus GC-rich promoter binding protein 1, mRNA (cDNA clone MGC:91361 IMAG...
Mus musculus GC-rich promoter binding protein 1, mRNA (cDNA clone MGC:91361 IMAGE:30614988), complete cds
gi|45219896|gb|BC067075.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004239166	Laan Lab, Human Genetics Research Group, University of Tartu	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Sep 1, 2023)	germline	research	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004239166

Laan Lab, Human Genetics Research Group, University of Tartu

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Sep 1, 2023)

germline

research

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	1	not provided	not provided	1	not provided	research

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Laan Lab, Human Genetics Research Group, University of Tartu, SCV004239166.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	research	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	1	not provided	not provided		1	not provided	not provided	not provided

Last Updated: Apr 15, 2024

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