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NM_003361.4(UMOD):c.767G>C (p.Cys256Ser) AND Familial juvenile hyperuricemic nephropathy type 1

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Mar 7, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003991265.2

Allele description [Variation Report for NM_003361.4(UMOD):c.767G>C (p.Cys256Ser)]

NM_003361.4(UMOD):c.767G>C (p.Cys256Ser)

Gene:
UMOD:uromodulin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p12.3
Genomic location:
Preferred name:
NM_003361.4(UMOD):c.767G>C (p.Cys256Ser)
HGVS:
  • NC_000016.10:g.20348534C>G
  • NG_008151.1:g.9182G>C
  • NM_001008389.3:c.767G>C
  • NM_001278614.2:c.866G>C
  • NM_001378232.1:c.767G>C
  • NM_001378233.1:c.767G>C
  • NM_001378234.1:c.767G>C
  • NM_001378235.1:c.767G>C
  • NM_001378237.1:c.767G>C
  • NM_003361.4:c.767G>CMANE SELECT
  • NP_001008390.1:p.Cys256Ser
  • NP_001265543.1:p.Cys289Ser
  • NP_001365161.1:p.Cys256Ser
  • NP_001365162.1:p.Cys256Ser
  • NP_001365163.1:p.Cys256Ser
  • NP_001365164.1:p.Cys256Ser
  • NP_001365166.1:p.Cys256Ser
  • NP_003352.2:p.Cys256Ser
  • NC_000016.9:g.20359856C>G
  • NR_165456.1:n.992G>C
Protein change:
C256S
Molecular consequence:
  • NM_001008389.3:c.767G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001278614.2:c.866G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001378232.1:c.767G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001378233.1:c.767G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001378234.1:c.767G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001378235.1:c.767G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001378237.1:c.767G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003361.4:c.767G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NR_165456.1:n.992G>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
2

Condition(s)

Name:
Familial juvenile hyperuricemic nephropathy type 1 (ADTKD1)
Synonyms:
Medullary cystic kidney disease 2, autosomal dominant; TUBULOINTERSTITIAL KIDNEY DISEASE, AUTOSOMAL DOMINANT, 1; Glomerulocystic kidney disease with hyperuricemia and isosthenuria; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0008073; MedGen: C4551496; Orphanet: 209886; Orphanet: 34149; OMIM: 162000

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004808591MVZ Medizinische Genetik Mainz
criteria provided, single submitter

(UK Practice Guidelines For Variant Classification V4 01 2020)
Likely pathogenic
(Mar 7, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Details of each submission

From MVZ Medizinische Genetik Mainz, SCV004808591.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
2not provided1not providednot providedclinical testingnot provided

Description

ACMG Criteria: PM5, PM1, PM2_SUP, PP3, PP4 (ACMG Version 4)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided
2germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Jun 2, 2024