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NM_000162.5(GCK):c.118G>T (p.Glu40Ter) AND Maturity-onset diabetes of the young type 2

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Nov 30, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003991166.2

Allele description [Variation Report for NM_000162.5(GCK):c.118G>T (p.Glu40Ter)]

NM_000162.5(GCK):c.118G>T (p.Glu40Ter)

Gene:
GCK:glucokinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7p13
Genomic location:
Preferred name:
NM_000162.5(GCK):c.118G>T (p.Glu40Ter)
HGVS:
  • NC_000007.14:g.44153391C>A
  • NG_008847.2:g.49780G>T
  • NM_000162.5:c.118G>TMANE SELECT
  • NM_001354800.1:c.118G>T
  • NM_033507.3:c.121G>T
  • NM_033508.3:c.115G>T
  • NP_000153.1:p.Glu40Ter
  • NP_001341729.1:p.Glu40Ter
  • NP_277042.1:p.Glu41Ter
  • NP_277043.1:p.Glu39Ter
  • LRG_1074t1:c.118G>T
  • LRG_1074t2:c.121G>T
  • LRG_1074:g.49780G>T
  • LRG_1074p1:p.Glu40Ter
  • LRG_1074p2:p.Glu41Ter
  • NC_000007.13:g.44192990C>A
Protein change:
E39*
Molecular consequence:
  • NM_000162.5:c.118G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354800.1:c.118G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_033507.3:c.121G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_033508.3:c.115G>T - nonsense - [Sequence Ontology: SO:0001587]
Observations:
1

Condition(s)

Name:
Maturity-onset diabetes of the young type 2
Synonyms:
MODY type 2; Diabetes mellitus MODY type 2; MODY glucokinase-related; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007453; MedGen: C0342277; Orphanet: 552; OMIM: 125851

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004808486MVZ Medizinische Genetik Mainz
criteria provided, single submitter

(UK Practice Guidelines For Variant Classification V4 01 2020)
Pathogenic
(Nov 30, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Details of each submission

From MVZ Medizinische Genetik Mainz, SCV004808486.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

ACMG Criteria: PVS1,PM2_SUP,PP3

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Jun 2, 2024