NM_006186.4(NR4A2):c.1789C>T (p.Pro597Ser) AND Intellectual developmental disorder with language impairment and early-onset DOPA-responsive dystonia-parkinsonism

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 25, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003989049.3

Allele description [Variation Report for NM_006186.4(NR4A2):c.1789C>T (p.Pro597Ser)]

NM_006186.4(NR4A2):c.1789C>T (p.Pro597Ser)

Gene:

NR4A2:nuclear receptor subfamily 4 group A member 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2q24.1

Genomic location:

Preferred name:

NM_006186.4(NR4A2):c.1789C>T (p.Pro597Ser)

HGVS:

NC_000002.12:g.156325752G>A
NG_011821.1:g.12024C>T
NG_011821.2:g.11969C>T
NM_006186.4:c.1789C>TMANE SELECT
NM_173173.3:c.1600C>T
NP_006177.1:p.Pro597Ser
NP_775265.1:p.Pro534Ser
NC_000002.11:g.157182264G>A

Protein change:

P534S

Molecular consequence:

NM_006186.4:c.1789C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_173173.3:c.1600C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Intellectual developmental disorder with language impairment and early-onset DOPA-responsive dystonia-parkinsonism (IDLDP)
Identifiers:: MONDO: MONDO:0859257; MedGen: C5677001; OMIM: 619911

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004805546	Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Mar 25, 2024)	germline	research	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004805546

Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Mar 25, 2024)

germline

research

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	research

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center, SCV004805546.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	research	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 16, 2024

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Relating variation to medicine