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NM_006772.3(SYNGAP1):c.2539C>T (p.Gln847Ter) AND Intellectual disability, autosomal dominant 5

Germline classification:
not provided (1 submission)
Review status:
no classification provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003987694.2

Allele description [Variation Report for NM_006772.3(SYNGAP1):c.2539C>T (p.Gln847Ter)]

NM_006772.3(SYNGAP1):c.2539C>T (p.Gln847Ter)

Genes:
SYNGAP1-AS1:SYNGAP1 antisense RNA 1 [Gene - HGNC]
SYNGAP1:synaptic Ras GTPase activating protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p21.32
Genomic location:
Preferred name:
NM_006772.3(SYNGAP1):c.2539C>T (p.Gln847Ter)
HGVS:
  • NC_000006.12:g.33443091C>T
  • NG_016137.2:g.28022C>T
  • NM_001130066.2:c.2497C>T
  • NM_006772.3:c.2539C>TMANE SELECT
  • NP_001123538.1:p.Gln833Ter
  • NP_006763.2:p.Gln847Ter
  • LRG_1193t1:c.2539C>T
  • LRG_1193:g.28022C>T
  • LRG_1193p1:p.Gln847Ter
  • NC_000006.11:g.33410868C>T
  • NM_006772.2:c.2539C>T
Protein change:
Q833*
Links:
dbSNP: rs1554122200
NCBI 1000 Genomes Browser:
rs1554122200
Molecular consequence:
  • NM_001130066.2:c.2497C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_006772.3:c.2539C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Intellectual disability, autosomal dominant 5 (MRD5)
Synonyms:
INTELLECTUAL DEVELOPMENTAL DISORDER, AUTOSOMAL DOMINANT 5
Identifiers:
MONDO: MONDO:0012960; MedGen: C2675473; OMIM: 612621

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004804646GenomeConnect - Brain Gene Registry
no classification provided
not providedunknownphenotyping only

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyes1not providednot provided1not providedphenotyping only

Details of each submission

From GenomeConnect - Brain Gene Registry, SCV004804646.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedphenotyping onlynot provided

Description

Variant classified as Pathogenic and reported on 09-27-2018 by GeneDx. Assertions are reported exactly as they appear on the patient provided laboratory report. GenomeConnect does not attempt to reinterpret the variant. The IDDRC-CTSA National Brain Gene Registry (BGR) is a study funded by the U.S. National Center for Advancing Translational Sciences (NCATS) and includes 13 Intellectual and Developmental Disability Research Center (IDDRC) institutions. The study is led by Principal Investigator Dr. Philip Payne from Washington University. The BGR is a data commons of gene variants paired with subject clinical information. This database helps scientists learn more about genetic changes and their impact on the brain and behavior. Participation in the Brain Gene Registry requires participation in GenomeConnect. More information about the Brain Gene Registry can be found on the study website - https://braingeneregistry.wustl.edu/.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyes1not providednot provided1not providednot providednot provided

Last Updated: Jun 23, 2024