U.S. flag

An official website of the United States government

GRCh37/hg19 4p16.3-16.1(chr4:68345-7923907)x1 AND not specified

Germline classification:
Pathogenic (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003986500.1

Allele description [Variation Report for GRCh37/hg19 4p16.3-16.1(chr4:68345-7923907)x1]

GRCh37/hg19 4p16.3-16.1(chr4:68345-7923907)x1

Genes:
  • ATP5ME:ATP synthase membrane subunit e [Gene - OMIM - HGNC]
  • CTBP1:C-terminal binding protein 1 [Gene - OMIM - HGNC]
  • POLN:DNA polymerase nu [Gene - OMIM - HGNC]
  • EVC:EvC ciliary complex subunit 1 [Gene - OMIM - HGNC]
  • EVC2:EvC ciliary complex subunit 2 [Gene - OMIM - HGNC]
  • GRK4:G protein-coupled receptor kinase 4 [Gene - OMIM - HGNC]
  • GRPEL1:GrpE like 1, mitochondrial [Gene - OMIM - HGNC]
  • HAUS3:HAUS augmin like complex subunit 3 [Gene - OMIM - HGNC]
  • HGFAC:HGF activator [Gene - OMIM - HGNC]
  • KIAA0232:KIAA0232 [Gene - OMIM - HGNC]
  • LRPAP1:LDL receptor related protein associated protein 1 [Gene - OMIM - HGNC]
  • LYAR:Ly1 antibody reactive [Gene - OMIM - HGNC]
  • MXD4:MAX dimerization protein 4 [Gene - OMIM - HGNC]
  • MRFAP1L1:Morf4 family associated protein 1 like 1 [Gene - HGNC]
  • MRFAP1:Morf4 family associated protein 1 [Gene - OMIM - HGNC]
  • MSANTD1:Myb/SANT DNA binding domain containing 1 [Gene - HGNC]
  • NAT8L:N-acetyltransferase 8 like [Gene - OMIM - HGNC]
  • NICOL1:NELL2 interacting cell ontogeny regulator 1 [Gene - OMIM - HGNC]
  • NKX1-1:NK1 homeobox 1 [Gene - OMIM - HGNC]
  • NOP14:NOP14 nucleolar protein [Gene - OMIM - HGNC]
  • S100P:S100 calcium binding protein P [Gene - OMIM - HGNC]
  • SH3BP2:SH3 domain binding protein 2 [Gene - OMIM - HGNC]
  • TBC1D14:TBC1 domain family member 14 [Gene - OMIM - HGNC]
  • TNIP2:TNFAIP3 interacting protein 2 [Gene - OMIM - HGNC]
  • UVSSA:UV stimulated scaffold protein A [Gene - OMIM - HGNC]
  • AFAP1:actin filament associated protein 1 [Gene - OMIM - HGNC]
  • ADD1:adducin 1 [Gene - OMIM - HGNC]
  • ADRA2C:adrenoceptor alpha 2C [Gene - OMIM - HGNC]
  • IDUA:alpha-L-iduronidase [Gene - OMIM - HGNC]
  • BLOC1S4:biogenesis of lysosomal organelles complex 1 subunit 4 [Gene - OMIM - HGNC]
  • C4orf50:chromosome 4 open reading frame 50 [Gene - HGNC]
  • CFAP184:cilia and flagella associated protein 184 [Gene - OMIM - HGNC]
  • CRMP1:collapsin response mediator protein 1 [Gene - OMIM - HGNC]
  • CPLX1:complexin 1 [Gene - OMIM - HGNC]
  • GAK:cyclin G associated kinase [Gene - OMIM - HGNC]
  • CRIPAK:cysteine rich PAK1 inhibitor [Gene - OMIM - HGNC]
  • CYTL1:cytokine like 1 [Gene - OMIM - HGNC]
  • DGKQ:diacylglycerol kinase theta [Gene - OMIM - HGNC]
  • DOK7:docking protein 7 [Gene - OMIM - HGNC]
  • FAM193A:family with sequence similarity 193 member A [Gene - OMIM - HGNC]
  • FAM53A:family with sequence similarity 53 member A [Gene - OMIM - HGNC]
  • FGFR3:fibroblast growth factor receptor 3 [Gene - OMIM - HGNC]
  • FGFRL1:fibroblast growth factor receptor like 1 [Gene - OMIM - HGNC]
  • HTT:huntingtin [Gene - OMIM - HGNC]
  • JAKMIP1:janus kinase and microtubule interacting protein 1 [Gene - OMIM - HGNC]
  • LETM1:leucine zipper and EF-hand containing transmembrane protein 1 [Gene - OMIM - HGNC]
  • LINC01587:long intergenic non-protein coding RNA 1587 [Gene - HGNC]
  • MAEA:macrophage erythroblast attacher, E3 ubiquitin ligase [Gene - OMIM - HGNC]
  • MFSD10:major facilitator superfamily domain containing 10 [Gene - OMIM - HGNC]
  • MAN2B2:mannosidase alpha class 2B member 2 [Gene - OMIM - HGNC]
  • MSX1:msh homeobox 1 [Gene - OMIM - HGNC]
  • MYL5:myosin light chain 5 [Gene - OMIM - HGNC]
  • NELFA:negative elongation factor complex member A [Gene - OMIM - HGNC]
  • NSG1:neuronal vesicle trafficking associated 1 [Gene - OMIM - HGNC]
  • NSD2:nuclear receptor binding SET domain protein 2 [Gene - OMIM - HGNC]
  • OTOP1:otopetrin 1 [Gene - OMIM - HGNC]
  • PIGG:phosphatidylinositol glycan anchor biosynthesis class G (EMM blood group) [Gene - OMIM - HGNC]
  • PDE6B:phosphodiesterase 6B [Gene - OMIM - HGNC]
  • PCGF3:polycomb group ring finger 3 [Gene - OMIM - HGNC]
  • PSAPL1:prosaposin like 1 [Gene - HGNC]
  • PPP2R2C:protein phosphatase 2 regulatory subunit Bgamma [Gene - OMIM - HGNC]
  • RGS12:regulator of G protein signaling 12 [Gene - OMIM - HGNC]
  • RNF212:ring finger protein 212 [Gene - OMIM - HGNC]
  • RNF4:ring finger protein 4 [Gene - OMIM - HGNC]
  • STK32B:serine/threonine kinase 32B [Gene - HGNC]
  • SLC26A1:solute carrier family 26 member 1 [Gene - OMIM - HGNC]
  • SLC49A3:solute carrier family 49 member 3 [Gene - OMIM - HGNC]
  • SORCS2:sortilin related VPS10 domain containing receptor 2 [Gene - OMIM - HGNC]
  • SPON2:spondin 2 [Gene - OMIM - HGNC]
  • SLBP:stem-loop histone mRNA binding protein [Gene - OMIM - HGNC]
  • STX18:syntaxin 18 [Gene - OMIM - HGNC]
  • TADA2B:transcriptional adaptor 2B [Gene - OMIM - HGNC]
  • TACC3:transforming acidic coiled-coil containing protein 3 [Gene - OMIM - HGNC]
  • TMEM128:transmembrane protein 128 [Gene - HGNC]
  • TMEM129:transmembrane protein 129, E3 ubiquitin ligase [Gene - OMIM - HGNC]
  • TMEM175:transmembrane protein 175 [Gene - OMIM - HGNC]
  • WFS1:wolframin ER transmembrane glycoprotein [Gene - OMIM - HGNC]
  • ZFYVE28:zinc finger FYVE-type containing 28 [Gene - OMIM - HGNC]
  • ZBTB49:zinc finger and BTB domain containing 49 [Gene - OMIM - HGNC]
  • ZNF141:zinc finger protein 141 [Gene - OMIM - HGNC]
  • ZNF595:zinc finger protein 595 [Gene - HGNC]
  • ZNF718:zinc finger protein 718 [Gene - HGNC]
  • ZNF721:zinc finger protein 721 [Gene - HGNC]
  • ZNF732:zinc finger protein 732 [Gene - HGNC]
Variant type:
copy number loss
Cytogenetic location:
4p16.3-16.1
Genomic location:
Chr4: 68345 - 7923907 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 4p16.3-16.1(chr4:68345-7923907)x1
HGVS:
    Observations:
    1

    Condition(s)

    Synonyms:
    AllHighlyPenetrant
    Identifiers:
    MedGen: CN169374

    Recent activity

    Your browsing activity is empty.

    Activity recording is turned off.

    Turn recording back on

    See more...

    Assertion and evidence details

    Submission AccessionSubmitterReview Status
    (Assertion method)
    Clinical Significance
    (Last evaluated)
    OriginMethodCitations
    SCV004802629ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories
    criteria provided, single submitter

    (Constitutional Copy Number Variant Assertion Criteria)
    Pathogenicgermlineclinical testing

    Citation Link

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providedgermlineunknown1not providednot providednot providednot providedclinical testing

    Details of each submission

    From ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories, SCV004802629.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not provided1not providednot providedclinical testingnot provided
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1germlineunknownnot providednot providednot provided1not providednot providednot provided

    Last Updated: Mar 30, 2024