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NM_000479.5(AMH):c.35T>G (p.Val12Gly) AND AMH-related disorder

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 26, 2024
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003972605.2

Allele description [Variation Report for NM_000479.5(AMH):c.35T>G (p.Val12Gly)]

NM_000479.5(AMH):c.35T>G (p.Val12Gly)

Genes:
LOC108783649:AMH 5' regulatory region [Gene]
AMH:anti-Mullerian hormone [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.3
Genomic location:
Preferred name:
NM_000479.5(AMH):c.35T>G (p.Val12Gly)
HGVS:
  • NC_000019.10:g.2249367T>G
  • NG_012190.1:g.5254T>G
  • NG_051647.1:g.3134T>G
  • NM_000479.4:c.35T>G
  • NM_000479.5:c.35T>GMANE SELECT
  • NP_000470.3:p.Val12Gly
  • NC_000019.9:g.2249366T>G
  • NM_000479.3:c.35T>G
Protein change:
V12G
Links:
dbSNP: rs149082963
NCBI 1000 Genomes Browser:
rs149082963
Molecular consequence:
  • NM_000479.5:c.35T>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
AMH-related disorder
Synonyms:
AMH-related condition
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004797379PreventionGenetics, part of Exact Sciences
no assertion criteria provided
Uncertain significance
(Mar 26, 2024)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004797379.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The AMH c.35T>G variant is predicted to result in the amino acid substitution p.Val12Gly. This variant has been reported in the compound heterozygous and homozygous states in two families with male individuals affected with persistent Mullerian duct syndrome (Imbeaud et al. 1994. PubMed ID: 8162013; Mazen et al. 2011. PubMed ID: 22188863). This variant has also been reported in the heterozygous state in female individuals with polycystic ovary syndrome (Gorsic et al. 2017. PubMed ID: 28505284). At PreventionGenetics, this variant was observed in the homozygous state in an individual with neurodevelopmental features, musculoskeletal features, dysmorphic features, gastrointestinal and genitourinary issues. Functional studies have conflicting results on the impact of this variant; a dual luciferase reporter assay showed significantly reduced AMH signaling (Gorsic et al. 2017. PubMed ID: 28505284), while another luciferase reporter assay showed comparable bioactivity to wildtype (Meng et al. 2023, PubMedID: 37004205). This variant is present in 0.35% of alleles in individuals of European (Non-Finnish) descent (as displayed in the table above). However, in gnomAD v4 (available only on GRCh38) 8 homozygotes are documented, which is higher than expected for this disorder. At this time, the clinical significance of this variant is uncertain due to the absence of conclusive functional and genetic evidence.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024