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NM_000166.6(GJB1):c.185G>C (p.Ser62Thr) AND Charcot-Marie-Tooth Neuropathy X

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 12, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003838105.2

Allele description [Variation Report for NM_000166.6(GJB1):c.185G>C (p.Ser62Thr)]

NM_000166.6(GJB1):c.185G>C (p.Ser62Thr)

Gene:
GJB1:gap junction protein beta 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq13.1
Genomic location:
Preferred name:
NM_000166.6(GJB1):c.185G>C (p.Ser62Thr)
HGVS:
  • NC_000023.11:g.71223892G>C
  • NG_008357.1:g.13681G>C
  • NM_000166.6:c.185G>CMANE SELECT
  • NM_001097642.3:c.185G>C
  • NP_000157.1:p.Ser62Thr
  • NP_001091111.1:p.Ser62Thr
  • NP_001091111.1:p.Ser62Thr
  • LRG_245t1:c.185G>C
  • LRG_245t2:c.185G>C
  • LRG_245:g.13681G>C
  • LRG_245p1:p.Ser62Thr
  • LRG_245p2:p.Ser62Thr
  • NC_000023.10:g.70443742G>C
  • NM_001097642.2:c.185G>C
Protein change:
S62T
Molecular consequence:
  • NM_000166.6:c.185G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001097642.3:c.185G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Charcot-Marie-Tooth Neuropathy X
Identifiers:
MedGen: CN118851

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004631070Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Apr 12, 2023)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Vocal cord paresis and probable X-linked Charcot-Marie-Tooth disease with novel GJB1 mutation.

Li Q, Chen M, Liu K, Lin X, Chui D.

Int J Neurosci. 2010 Nov;120(11):731-4. doi: 10.3109/00207454.2010.513461.

PubMed [citation]
PMID:
20942588

GJB1 Mutation-A Disease Spectrum: Report of Case Series.

Niu J, Dai Y, Liu M, Li Y, Ding Q, Guan Y, Cui L, Jin L.

Front Neurol. 2019;10:1406. doi: 10.3389/fneur.2019.01406.

PubMed [citation]
PMID:
32010055
PMCID:
PMC6974795
See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV004631070.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

This variant disrupts the p.Ser62 amino acid residue in GJB1. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 20942588). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt GJB1 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This missense change has been observed in individual(s) with Charcot-Marie-Tooth disease (PMID: 32010055). This variant is not present in population databases (gnomAD no frequency). This sequence change replaces serine, which is neutral and polar, with threonine, which is neutral and polar, at codon 62 of the GJB1 protein (p.Ser62Thr).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024