NM_020631.6(PLEKHG5):c.1327G>T (p.Glu443Ter) AND multiple conditions

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Oct 26, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003810207.2

Allele description [Variation Report for NM_020631.6(PLEKHG5):c.1327G>T (p.Glu443Ter)]

NM_020631.6(PLEKHG5):c.1327G>T (p.Glu443Ter)

Gene:

PLEKHG5:pleckstrin homology and RhoGEF domain containing G5 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1p36.31

Genomic location:

Preferred name:

NM_020631.6(PLEKHG5):c.1327G>T (p.Glu443Ter)

HGVS:

NC_000001.11:g.6471055C>A
NG_007978.1:g.53955G>T
NG_029910.1:g.141G>T
NM_001042663.3:c.1438G>T
NM_001042664.2:c.1327G>T
NM_001042665.2:c.1327G>T
NM_001265592.2:c.1438G>T
NM_001265593.1:c.1534G>T
NM_001265593.2:c.1534G>T
NM_001265594.3:c.1327G>T
NM_020631.6:c.1327G>TMANE SELECT
NM_198681.4:c.1327G>T
NP_001036128.2:p.Glu480Ter
NP_001036129.1:p.Glu443Ter
NP_001036130.1:p.Glu443Ter
NP_001252521.2:p.Glu480Ter
NP_001252522.1:p.Glu512Ter
NP_001252523.1:p.Glu443Ter
NP_065682.2:p.Glu443Ter
NP_065682.2:p.Glu443Ter
NP_941374.3:p.Glu443Ter
LRG_262t1:c.1327G>T
LRG_262:g.53955G>T
LRG_262p1:p.Glu443Ter
NC_000001.10:g.6531115C>A
NM_020631.3:c.1327G>T

Protein change:

E443*

Molecular consequence:

NM_001042663.3:c.1438G>T - nonsense - [Sequence Ontology: SO:0001587]
NM_001042664.2:c.1327G>T - nonsense - [Sequence Ontology: SO:0001587]
NM_001042665.2:c.1327G>T - nonsense - [Sequence Ontology: SO:0001587]
NM_001265592.2:c.1438G>T - nonsense - [Sequence Ontology: SO:0001587]
NM_001265593.2:c.1534G>T - nonsense - [Sequence Ontology: SO:0001587]
NM_001265594.3:c.1327G>T - nonsense - [Sequence Ontology: SO:0001587]
NM_020631.6:c.1327G>T - nonsense - [Sequence Ontology: SO:0001587]
NM_198681.4:c.1327G>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:: Neuronopathy, distal hereditary motor, autosomal recessive 4
Synonyms:: Distal spinal muscular atrophy, autosomal recessive 4; Autosomal recessive lower motor neuron disease with childhood onset; NEUROPATHY, DISTAL HEREDITARY MOTOR, AUTOSOMAL RECESSIVE 4
Identifiers:: MONDO: MONDO:0012608; MedGen: C1970211; Orphanet: 206580; OMIM: 611067

Name:: Charcot-Marie-Tooth disease recessive intermediate C
Synonyms:: CHARCOT-MARIE-TOOTH NEUROPATHY, RECESSIVE INTERMEDIATE C
Identifiers:: MONDO: MONDO:0014154; MedGen: C3809309; Orphanet: 369867; OMIM: 615376

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004609826	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Pathogenic (Oct 26, 2023)	germline	clinical testing	PubMed (3) [See all records that cite these PMIDs] 17564964, 23777631, 28492532

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004609826

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Pathogenic
(Oct 26, 2023)

germline

clinical testing

PubMed (3)
[See all records that cite these PMIDs]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

The nuclear factor kappaB-activator gene PLEKHG5 is mutated in a form of autosomal recessive lower motor neuron disease with childhood onset.

Maystadt I, Rezsöhazy R, Barkats M, Duque S, Vannuffel P, Remacle S, Lambert B, Najimi M, Sokal E, Munnich A, Viollet L, Verellen-Dumoulin C.

Am J Hum Genet. 2007 Jul;81(1):67-76. Epub 2007 May 16.

PubMed [citation]

PMID:: 17564964
PMCID:: PMC1950913

PLEKHG5 deficiency leads to an intermediate form of autosomal-recessive Charcot-Marie-Tooth disease.

Azzedine H, Zavadakova P, Planté-Bordeneuve V, Vaz Pato M, Pinto N, Bartesaghi L, Zenker J, Poirot O, Bernard-Marissal N, Arnaud Gouttenoire E, Cartoni R, Title A, Venturini G, Médard JJ, Makowski E, Schöls L, Claeys KG, Stendel C, Roos A, Weis J, Dubourg O, Leal Loureiro J, et al.

Hum Mol Genet. 2013 Oct 15;22(20):4224-32. doi: 10.1093/hmg/ddt274. Epub 2013 Jun 17.

PubMed [citation]

PMID:: 23777631
PMCID:: PMC3983407

See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV004609826.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (3)

Description

This sequence change creates a premature translational stop signal (p.Glu443*) in the PLEKHG5 gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in PLEKHG5 are known to be pathogenic (PMID: 17564964, 23777631). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with PLEKHG5-related conditions. For these reasons, this variant has been classified as Pathogenic.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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