U.S. flag

An official website of the United States government

NM_032977.4(CASP10):c.278A>C (p.Gln93Pro) AND Autoimmune lymphoproliferative syndrome type 2A

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 29, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003794727.1

Allele description

NM_032977.4(CASP10):c.278A>C (p.Gln93Pro)

Gene:
CASP10:caspase 10 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q33.1
Genomic location:
Preferred name:
NM_032977.4(CASP10):c.278A>C (p.Gln93Pro)
HGVS:
  • NC_000002.12:g.201186055A>C
  • NG_007265.1:g.7924A>C
  • NM_001206524.2:c.278A>C
  • NM_001206542.2:c.278A>C
  • NM_001230.5:c.278A>C
  • NM_001306083.2:c.278A>C
  • NM_032974.5:c.278A>C
  • NM_032976.4:c.278A>C
  • NM_032977.4:c.278A>CMANE SELECT
  • NP_001193453.1:p.Gln93Pro
  • NP_001193471.1:p.Gln93Pro
  • NP_001221.2:p.Gln93Pro
  • NP_001293012.1:p.Gln93Pro
  • NP_116756.2:p.Gln93Pro
  • NP_116758.1:p.Gln93Pro
  • NP_116759.2:p.Gln93Pro
  • NP_116759.2:p.Gln93Pro
  • LRG_33t1:c.278A>C
  • LRG_33:g.7924A>C
  • LRG_33p1:p.Gln93Pro
  • NC_000002.11:g.202050778A>C
  • NM_032977.3:c.278A>C
Protein change:
Q93P
Molecular consequence:
  • NM_001206524.2:c.278A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001206542.2:c.278A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001230.5:c.278A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001306083.2:c.278A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_032974.5:c.278A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_032976.4:c.278A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_032977.4:c.278A>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Autoimmune lymphoproliferative syndrome type 2A
Synonyms:
AUTOIMMUNE LYMPHOPROLIFERATIVE SYNDROME, TYPE IIA; Autoimmune lymphoproliferative syndrome type 2
Identifiers:
MONDO: MONDO:0011383; MedGen: C1858968; Orphanet: 3261; OMIM: 603909

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004587458Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Uncertain significance
(May 29, 2023) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Invitae, SCV004587458.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This sequence change replaces glutamine, which is neutral and polar, with proline, which is neutral and non-polar, at codon 93 of the CASP10 protein (p.Gln93Pro). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt CASP10 protein function. This variant has not been reported in the literature in individuals affected with CASP10-related conditions. This variant is not present in population databases (gnomAD no frequency).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 5, 2024