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NM_000044.6(AR):c.1106T>C (p.Leu369Pro) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 16, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003779264.2

Allele description [Variation Report for NM_000044.6(AR):c.1106T>C (p.Leu369Pro)]

NM_000044.6(AR):c.1106T>C (p.Leu369Pro)

Gene:
AR:androgen receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq12
Genomic location:
Preferred name:
NM_000044.6(AR):c.1106T>C (p.Leu369Pro)
HGVS:
  • NC_000023.11:g.67546252T>C
  • NG_009014.2:g.7221T>C
  • NM_000044.6:c.1106T>CMANE SELECT
  • NM_001011645.3:c.-678T>C
  • NM_001348061.1:c.1106T>C
  • NM_001348063.1:c.1106T>C
  • NM_001348064.1:c.1106T>C
  • NM_001424175.1:c.1106T>C
  • NP_000035.2:p.Leu369Pro
  • NP_001334990.1:p.Leu369Pro
  • NP_001334992.1:p.Leu369Pro
  • NP_001334993.1:p.Leu369Pro
  • NP_001411104.1:p.Leu369Pro
  • LRG_1406t1:c.1106T>C
  • LRG_1406:g.7221T>C
  • LRG_1406p1:p.Leu369Pro
  • NC_000023.10:g.66766094T>C
Protein change:
L369P
Molecular consequence:
  • NM_001011645.3:c.-678T>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_000044.6:c.1106T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001348061.1:c.1106T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001348063.1:c.1106T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001348064.1:c.1106T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001424175.1:c.1106T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Androgen resistance syndrome (AIS)
Synonyms:
TESTICULAR FEMINIZATION SYNDROME; Androgen insensitivity syndrome; Androgen receptor deficiency; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0019154; MedGen: C0039585; Orphanet: 99429; OMIM: 300068
Name:
Kennedy disease (SMAX1)
Synonyms:
SPINAL AND BULBAR MUSCULAR ATROPHY, X-LINKED 1; Bulbo-spinal atrophy X-linked; Kennedy spinal and bulbar muscular atrophy; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0010735; MedGen: C1839259; Orphanet: 481; OMIM: 313200

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004573291Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Uncertain significance
(May 16, 2023) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV004573291.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on AR protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant has not been reported in the literature in individuals affected with AR-related conditions. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This sequence change replaces leucine, which is neutral and non-polar, with proline, which is neutral and non-polar, at codon 369 of the AR protein (p.Leu369Pro).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024