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NM_024301.5(FKRP):c.587G>T (p.Gly196Val) AND Walker-Warburg congenital muscular dystrophy

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Oct 26, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003755395.1

Allele description [Variation Report for NM_024301.5(FKRP):c.587G>T (p.Gly196Val)]

NM_024301.5(FKRP):c.587G>T (p.Gly196Val)

Gene:
FKRP:fukutin related protein [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.32
Genomic location:
Preferred name:
NM_024301.5(FKRP):c.587G>T (p.Gly196Val)
HGVS:
  • NC_000019.10:g.46756037G>T
  • NG_008898.2:g.14992G>T
  • NM_001039885.3:c.587G>T
  • NM_024301.5:c.587G>TMANE SELECT
  • NP_001034974.1:p.Gly196Val
  • NP_077277.1:p.Gly196Val
  • LRG_761t1:c.587G>T
  • LRG_761:g.14992G>T
  • LRG_761p1:p.Gly196Val
  • NC_000019.9:g.47259294G>T
Protein change:
G196V
Molecular consequence:
  • NM_001039885.3:c.587G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024301.5:c.587G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Walker-Warburg congenital muscular dystrophy
Synonyms:
Muscular dystrophy-dystroglycanopathy, type A; Walker-Warburg syndrome
Identifiers:
MONDO: MONDO:0000171; MedGen: C0265221; Orphanet: 899; OMIM: PS236670

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004407561Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(Oct 26, 2022)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Inflammatory Changes in Limb Girdle Muscular Dystrophy Type 2I.

McMillan HJ, Michaud J.

Can J Neurol Sci. 2013 Nov;40(6):875-7. No abstract available.

PubMed [citation]
PMID:
24257234

Longitudinal functional and imaging outcome measures in FKRP limb-girdle muscular dystrophy.

Leung DG, Bocchieri AE, Ahlawat S, Jacobs MA, Parekh VS, Braverman V, Summerton K, Mansour J, Bibat G, Morris C, Marraffino S, Wagner KR.

BMC Neurol. 2020 May 19;20(1):196. doi: 10.1186/s12883-020-01774-5.

PubMed [citation]
PMID:
32429923
PMCID:
PMC7236878
See all PubMed Citations (3)

Details of each submission

From Invitae, SCV004407561.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Gly196 amino acid residue in FKRP. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 24257234, 32429923; Invitae). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt FKRP protein function. This missense change has been observed in individual(s) with clinical features of FKRP-related conditions (Invitae). This variant is not present in population databases (gnomAD no frequency). This sequence change replaces glycine, which is neutral and non-polar, with valine, which is neutral and non-polar, at codon 196 of the FKRP protein (p.Gly196Val).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 30, 2024