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NM_004004.6(GJB2):c.641T>G (p.Leu214Arg) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Mar 4, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003716035.2

Allele description [Variation Report for NM_004004.6(GJB2):c.641T>G (p.Leu214Arg)]

NM_004004.6(GJB2):c.641T>G (p.Leu214Arg)

Gene:
GJB2:gap junction protein beta 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q12.11
Genomic location:
Preferred name:
NM_004004.6(GJB2):c.641T>G (p.Leu214Arg)
HGVS:
  • NC_000013.11:g.20188941A>C
  • NG_008358.1:g.9035T>G
  • NM_004004.6:c.641T>GMANE SELECT
  • NP_003995.2:p.Leu214Arg
  • LRG_1350t1:c.641T>G
  • LRG_1350:g.9035T>G
  • LRG_1350p1:p.Leu214Arg
  • NC_000013.10:g.20763080A>C
Protein change:
L214R
Molecular consequence:
  • NM_004004.6:c.641T>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004505003Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(Mar 4, 2023)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Pattern of connexin 26 (GJB2) mutations causing sensorineural hearing impairment in Ghana.

Hamelmann C, Amedofu GK, Albrecht K, Muntau B, Gelhaus A, Brobby GW, Horstmann RD.

Hum Mutat. 2001;18(1):84-5.

PubMed [citation]
PMID:
11439000

Altered gating properties of functional Cx26 mutants associated with recessive non-syndromic hearing loss.

Meşe G, Londin E, Mui R, Brink PR, White TW.

Hum Genet. 2004 Aug;115(3):191-9. Epub 2004 Jul 7.

PubMed [citation]
PMID:
15241677
See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV004505003.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Leu214 amino acid residue in GJB2. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 11439000, 15241677). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt GJB2 protein function. This variant has not been reported in the literature in individuals affected with GJB2-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces leucine, which is neutral and non-polar, with arginine, which is basic and polar, at codon 214 of the GJB2 protein (p.Leu214Arg).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024