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NM_000162.5(GCK):c.1079C>T (p.Ser360Leu) AND Maturity onset diabetes mellitus in young

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 18, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003577094.1

Allele description [Variation Report for NM_000162.5(GCK):c.1079C>T (p.Ser360Leu)]

NM_000162.5(GCK):c.1079C>T (p.Ser360Leu)

Gene:
GCK:glucokinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7p13
Genomic location:
Preferred name:
NM_000162.5(GCK):c.1079C>T (p.Ser360Leu)
HGVS:
  • NC_000007.14:g.44145671G>A
  • NG_008847.2:g.57500C>T
  • NM_000162.5:c.1079C>TMANE SELECT
  • NM_001354800.1:c.1079C>T
  • NM_001354801.1:c.68C>T
  • NM_001354802.1:c.-62C>T
  • NM_001354803.2:c.113C>T
  • NM_033507.3:c.1082C>T
  • NM_033508.3:c.1076C>T
  • NP_000153.1:p.Ser360Leu
  • NP_001341729.1:p.Ser360Leu
  • NP_001341730.1:p.Ser23Leu
  • NP_001341732.1:p.Ser38Leu
  • NP_277042.1:p.Ser361Leu
  • NP_277043.1:p.Ser359Leu
  • LRG_1074t1:c.1079C>T
  • LRG_1074t2:c.1082C>T
  • LRG_1074:g.57500C>T
  • LRG_1074p1:p.Ser360Leu
  • LRG_1074p2:p.Ser361Leu
  • NC_000007.13:g.44185270G>A
Protein change:
S23L
Molecular consequence:
  • NM_001354802.1:c.-62C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_000162.5:c.1079C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354800.1:c.1079C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354801.1:c.68C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354803.2:c.113C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_033507.3:c.1082C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_033508.3:c.1076C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Maturity onset diabetes mellitus in young (MODY)
Synonyms:
Mason type diabetes
Identifiers:
MONDO: MONDO:0018911; MedGen: C0342276; Orphanet: 552; OMIM: 606391; Human Phenotype Ontology: HP:0004904

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004363596MVZ Dr. Eberhard & Partner Dortmund
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Oct 18, 2023)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknown1not providednot provided1not providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From MVZ Dr. Eberhard & Partner Dortmund, SCV004363596.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

This variant was absent from variant databases (HGMD, ClinVar, LOVD). This variant has not yet been described in the literature and is not found in control groups of different ethnicities. Computer-based analyses support a pathogenic effect for the variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknown1not providednot provided1not providednot providednot provided

Last Updated: Feb 20, 2024