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NM_000128.4(F11):c.1103G>C (p.Gly368Ala) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Sep 8, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003558488.2

Allele description [Variation Report for NM_000128.4(F11):c.1103G>C (p.Gly368Ala)]

NM_000128.4(F11):c.1103G>C (p.Gly368Ala)

Gene:
F11:coagulation factor XI [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4q35.2
Genomic location:
Preferred name:
NM_000128.4(F11):c.1103G>C (p.Gly368Ala)
HGVS:
  • NC_000004.12:g.186280548G>C
  • NG_008051.1:g.19585G>C
  • NM_000128.4:c.1103G>CMANE SELECT
  • NP_000119.1:p.Gly368Ala
  • NP_000119.1:p.Gly368Ala
  • LRG_583t1:c.1103G>C
  • LRG_583:g.19585G>C
  • LRG_583p1:p.Gly368Ala
  • NC_000004.11:g.187201702G>C
  • NM_000128.3:c.1103G>C
Protein change:
G368A
Links:
dbSNP: rs748926718
NCBI 1000 Genomes Browser:
rs748926718
Molecular consequence:
  • NM_000128.4:c.1103G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004292793Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(Sep 8, 2023)
germlineclinical testing

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Prospective analysis of factor XI deficiencies in the Marseilles area identified four novel mutations among 12 consecutive unrelated families.

Quélin F, Frère C, Pouymayou C, Morange P, de Mazancourt P, Juhan-Vague I.

Blood Coagul Fibrinolysis. 2009 Jan;20(1):84-8. doi: 10.1097/MBC.0b013e32831bc51c.

PubMed [citation]
PMID:
20523169

[Analysis of a pedigree affected with hereditary coagulation factor XI deficiency due to compound heterozygous variants of F11 gene].

Yang T, Zhu J, Yang Q, Liu J, Yang L, Wang M.

Zhonghua Yi Xue Yi Chuan Xue Za Zhi. 2021 Mar 10;38(3):242-246. doi: 10.3760/cma.j.cn511374-20200123-00047. Chinese.

PubMed [citation]
PMID:
33751533
See all PubMed Citations (4)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV004292793.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (4)

Description

In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Gly368 amino acid residue in F11. Other variant(s) that disrupt this residue have been observed in individuals with F11-related conditions (PMID: 14717969, 20523169, 33751533), which suggests that this may be a clinically significant amino acid residue. This sequence change replaces glycine, which is neutral and non-polar, with alanine, which is neutral and non-polar, at codon 368 of the F11 protein (p.Gly368Ala). This variant is present in population databases (rs748926718, gnomAD 0.0009%). This missense change has been observed in individual(s) with factor XI deficiency (PMID: 14717969). This variant is also known as G350A. ClinVar contains an entry for this variant (Variation ID: 551619). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt F11 protein function.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024