NM_000525.4(KCNJ11):c.119G>A (p.Gly40Asp) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Nov 29, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003558487.2

Allele description [Variation Report for NM_000525.4(KCNJ11):c.119G>A (p.Gly40Asp)]

NM_000525.4(KCNJ11):c.119G>A (p.Gly40Asp)

Gene:
KCNJ11:potassium inwardly rectifying channel subfamily J member 11 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.1
Genomic location:
Preferred name:
NM_000525.4(KCNJ11):c.119G>A (p.Gly40Asp)
HGVS:
  • NC_000011.10:g.17387973C>T
  • NG_012446.1:g.5687G>A
  • NM_000525.4:c.119G>AMANE SELECT
  • NM_001166290.2:c.-16-127G>A
  • NM_001377296.1:c.-17+45G>A
  • NM_001377297.1:c.-16-127G>A
  • NP_000516.3:p.Gly40Asp
  • NP_000516.3:p.Gly40Asp
  • NC_000011.9:g.17409520C>T
  • NC_000011.9:g.17409520C>T
  • NM_000525.3:c.119G>A
Protein change:
G40D
Links:
dbSNP: rs1001873841
NCBI 1000 Genomes Browser:
rs1001873841
Molecular consequence:
  • NM_001166290.2:c.-16-127G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001377296.1:c.-17+45G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001377297.1:c.-16-127G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000525.4:c.119G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004295368Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(Nov 29, 2022)
germlineclinical testing

PubMed (6)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Clinical and genetic evaluation of patients with KATP channel mutations from the German registry for congenital hyperinsulinism.

Mohnike K, Wieland I, Barthlen W, Vogelgesang S, Empting S, Mohnike W, Meissner T, Zenker M.

Horm Res Paediatr. 2014;81(3):156-68. doi: 10.1159/000356905. Epub 2014 Jan 7.

PubMed [citation]
PMID:
24401662

A Case Series: Congenital Hyperinsulinism.

Alaei MR, Akbaroghli S, Keramatipour M, Alaei A.

Int J Endocrinol Metab. 2016 Oct;14(4):e37311. doi: 10.5812/ijem.37311.

PubMed [citation]
PMID:
28123437
PMCID:
PMC5237296
See all PubMed Citations (6)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV004295368.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (6)

Description

In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Gly40 amino acid residue in KCNJ11. Other variant(s) that disrupt this residue have been observed in individuals with KCNJ11-related conditions (PMID: 16357843, 24401662, 28123437), which suggests that this may be a clinically significant amino acid residue. Experimental studies have shown that this missense change affects KCNJ11 function (PMID: 10559219). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt KCNJ11 protein function. ClinVar contains an entry for this variant (Variation ID: 551373). This missense change has been observed in individual(s) with paternally inherited focal hyperinsulinism (PMID: 16357843). This variant has been reported in individual(s) with autosomal dominant diffuse hyperinsulinism (PMID: 27908292); however, the role of the variant in this condition is currently unclear. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces glycine, which is neutral and non-polar, with aspartic acid, which is acidic and polar, at codon 40 of the KCNJ11 protein (p.Gly40Asp).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024