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NM_000306.4(POU1F1):c.747del (p.Glu250fs) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Dec 26, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003556018.2

Allele description [Variation Report for NM_000306.4(POU1F1):c.747del (p.Glu250fs)]

NM_000306.4(POU1F1):c.747del (p.Glu250fs)

Gene:
POU1F1:POU class 1 homeobox 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
3p11.2
Genomic location:
Preferred name:
NM_000306.4(POU1F1):c.747del (p.Glu250fs)
HGVS:
  • NC_000003.12:g.87260024del
  • NG_008225.2:g.21565del
  • NM_000306.4:c.747delMANE SELECT
  • NM_001122757.3:c.825del
  • NP_000297.1:p.Glu250fs
  • NP_001116229.1:p.Glu276fs
  • NC_000003.11:g.87309173del
  • NC_000003.11:g.87309174del
  • NM_000306.3:c.747del
Protein change:
E250fs
Links:
OMIM: 173110.0009; dbSNP: rs587776798
NCBI 1000 Genomes Browser:
rs587776798
Molecular consequence:
  • NM_000306.4:c.747del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001122757.3:c.825del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004293117Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(Dec 26, 2022)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Genetic spectrum and predictors of mutations in four known genes in Asian Indian patients with growth hormone deficiency and orthotopic posterior pituitary: an emphasis on regional genetic diversity.

Kale S, Gada JV, Jadhav S, Lila AR, Sarathi V, Budyal S, Patt H, Goroshi MR, Thadani PM, Arya S, Kamble AA, Patil VA, Acharya S, Sankhe S, Shivane V, Raghavan V, Bandgar TR, Shah NS.

Pituitary. 2020 Dec;23(6):701-715. doi: 10.1007/s11102-020-01078-4.

PubMed [citation]
PMID:
32894409

Combined pituitary hormone deficiency caused by compound heterozygosity for two novel mutations in the POU domain of the Pit1/POU1F1 gene.

Hendriks-Stegeman BI, Augustijn KD, Bakker B, Holthuizen P, van der Vliet PC, Jansen M.

J Clin Endocrinol Metab. 2001 Apr;86(4):1545-50.

PubMed [citation]
PMID:
11297581
See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV004293117.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts a region of the POU1F1 protein in which other variant(s) (p.E250*) have been observed in individuals with POU1F1-related conditions (PMID: 32894409). This suggests that this is a clinically significant region of the protein, and that variants that disrupt it are likely to be disease-causing. Experimental studies have shown that this premature translational stop signal affects POU1F1 function (PMID: 11297581). Algorithms developed to predict the effect of variants on protein structure and function are not available or were not evaluated for this variant. ClinVar contains an entry for this variant (Variation ID: 13610). This premature translational stop signal has been observed in individual(s) with POU1F1-related conditions (PMID: 11297581). This variant is present in population databases (rs587776798, gnomAD 0.01%). This sequence change creates a premature translational stop signal (p.Glu250Asnfs*2) in the POU1F1 gene. While this is not anticipated to result in nonsense mediated decay, it is expected to disrupt the last 42 amino acid(s) of the POU1F1 protein.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024