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NM_004415.4(DSP):c.3799C>T (p.Arg1267Ter) AND Cardiomyopathy

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 21, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003531904.1

Allele description [Variation Report for NM_004415.4(DSP):c.3799C>T (p.Arg1267Ter)]

NM_004415.4(DSP):c.3799C>T (p.Arg1267Ter)

Gene:
DSP:desmoplakin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p24.3
Genomic location:
Preferred name:
NM_004415.4(DSP):c.3799C>T (p.Arg1267Ter)
HGVS:
  • NC_000006.12:g.7579989C>T
  • NG_008803.1:g.43353C>T
  • NM_001008844.3:c.3582+217C>T
  • NM_001319034.2:c.3799C>T
  • NM_004415.4:c.3799C>TMANE SELECT
  • NP_001305963.1:p.Arg1267Ter
  • NP_004406.2:p.Arg1267Ter
  • LRG_423t1:c.3799C>T
  • LRG_423:g.43353C>T
  • LRG_423p1:p.Arg1267Ter
  • NC_000006.11:g.7580222C>T
  • NM_004415.2:c.3799C>T
Protein change:
R1267*; ARG1267TER
Links:
OMIM: 125647.0010; dbSNP: rs121912997
NCBI 1000 Genomes Browser:
rs121912997
Molecular consequence:
  • NM_001008844.3:c.3582+217C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001319034.2:c.3799C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_004415.4:c.3799C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Cardiomyopathy (CMYO)
Synonyms:
Cardiomyopathies
Identifiers:
MONDO: MONDO:0004994; MedGen: C0878544; Human Phenotype Ontology: HP:0001638

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004363372Color Diagnostics, LLC DBA Color Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Aug 21, 2023)
germlineclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Loss of desmoplakin isoform I causes early onset cardiomyopathy and heart failure in a Naxos-like syndrome.

Uzumcu A, Norgett EE, Dindar A, Uyguner O, Nisli K, Kayserili H, Sahin SE, Dupont E, Severs NJ, Leigh IM, Yuksel-Apak M, Kelsell DP, Wollnik B.

J Med Genet. 2006 Feb;43(2):e5.

PubMed [citation]
PMID:
16467215
PMCID:
PMC2564645

Autosomal recessive transmission of familial nonsyndromic dilated cardiomyopathy due to compound desmoplakin gene mutations.

Surmacz R, Franaszczyk M, Pyda M, Płoski R, Bilińska ZT, Bobkowski W.

Pol Arch Intern Med. 2018 Dec 21;128(12):785-787. doi: 10.20452/pamw.4365. Epub 2018 Nov 6. No abstract available.

PubMed [citation]
PMID:
30398466
See all PubMed Citations (5)

Details of each submission

From Color Diagnostics, LLC DBA Color Health, SCV004363372.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (5)

Description

This variant changes 1 nucleotide in exon 23 of the DSP gene, creating a premature translation stop signal. This variant is expected to result in an absent or non-functional protein product. A study with skin biopsies from carrier individuals has shown that this variant causes an absent expression of the major DSP transcript (NM_004415) in the heart (PMID: 16467215). This variant has been reported in homozygous state in an individual affected with arrhythmogenic cardiomyopathy with epidermolytic palmoplantar keratoderma and wooly hair (PMID: 16467215), and in compound heterozygous state with another DSP pathogenic variant in an individual affected with arrhythmogenic-dilated cardiomyopathy with epidermolytic palmoplantar keratoderma and wooly hair (PMID: 30993396). This variant has also been reported in compound heterozygous state with a DSP variant of uncertain significance in two twin brothers affected with early-onset dilated cardiomyopathy (PMID: 30398466), and in heterozygous state in an individual suspected of having hereditary cardiomyopathy (PMID: 35083019) as well as in five asymptomatic individuals (PMID: 16467215, 30398466, 30993396). This variant has not been identified in the general population by the Genome Aggregation Database (gnomAD). Loss of DSP function is a known mechanism of disease (clinicalgenome.org). Based on the available evidence, this variant is classified as Pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 2, 2024