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NM_000038.6(APC):c.7495G>C (p.Val2499Leu) AND Hereditary cancer

Germline classification:
Likely benign (1 submission)
Last evaluated:
Jan 23, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003491971.1

Allele description [Variation Report for NM_000038.6(APC):c.7495G>C (p.Val2499Leu)]

NM_000038.6(APC):c.7495G>C (p.Val2499Leu)

Gene:
APC:APC regulator of WNT signaling pathway [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q22.2
Genomic location:
Preferred name:
NM_000038.6(APC):c.7495G>C (p.Val2499Leu)
HGVS:
  • NC_000005.10:g.112843089G>C
  • NG_008481.4:g.155569G>C
  • NM_000038.6:c.7495G>CMANE SELECT
  • NM_001127510.3:c.7495G>C
  • NM_001127511.3:c.7441G>C
  • NM_001354895.2:c.7495G>C
  • NM_001354896.2:c.7549G>C
  • NM_001354897.2:c.7525G>C
  • NM_001354898.2:c.7420G>C
  • NM_001354899.2:c.7411G>C
  • NM_001354900.2:c.7372G>C
  • NM_001354901.2:c.7318G>C
  • NM_001354902.2:c.7222G>C
  • NM_001354903.2:c.7192G>C
  • NM_001354904.2:c.7117G>C
  • NM_001354905.2:c.7015G>C
  • NM_001354906.2:c.6646G>C
  • NP_000029.2:p.Val2499Leu
  • NP_001120982.1:p.Val2499Leu
  • NP_001120983.2:p.Val2481Leu
  • NP_001341824.1:p.Val2499Leu
  • NP_001341825.1:p.Val2517Leu
  • NP_001341826.1:p.Val2509Leu
  • NP_001341827.1:p.Val2474Leu
  • NP_001341828.1:p.Val2471Leu
  • NP_001341829.1:p.Val2458Leu
  • NP_001341830.1:p.Val2440Leu
  • NP_001341831.1:p.Val2408Leu
  • NP_001341832.1:p.Val2398Leu
  • NP_001341833.1:p.Val2373Leu
  • NP_001341834.1:p.Val2339Leu
  • NP_001341835.1:p.Val2216Leu
  • LRG_130:g.155569G>C
  • NC_000005.9:g.112178786G>C
  • NM_000038.5:c.7495G>C
  • P25054:p.Val2499Leu
Protein change:
V2216L
Links:
UniProtKB: P25054#VAR_053978; dbSNP: rs33941929
NCBI 1000 Genomes Browser:
rs33941929
Molecular consequence:
  • NM_000038.6:c.7495G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127510.3:c.7495G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127511.3:c.7441G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354895.2:c.7495G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354896.2:c.7549G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354897.2:c.7525G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354898.2:c.7420G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354899.2:c.7411G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354900.2:c.7372G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354901.2:c.7318G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354902.2:c.7222G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354903.2:c.7192G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354904.2:c.7117G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354905.2:c.7015G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354906.2:c.6646G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer
Identifiers:
MedGen: C1333600

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000838151Mendelics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely benign
(Jan 23, 2024) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Mendelics, SCV000838151.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024