NM_004369.4(COL6A3):c.8665C>A (p.Pro2889Thr) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 15, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003490615.2

Allele description [Variation Report for NM_004369.4(COL6A3):c.8665C>A (p.Pro2889Thr)]

NM_004369.4(COL6A3):c.8665C>A (p.Pro2889Thr)

Gene:

COL6A3:collagen type VI alpha 3 chain [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2q37.3

Genomic location:

Preferred name:

NM_004369.4(COL6A3):c.8665C>A (p.Pro2889Thr)

HGVS:

NC_000002.12:g.237336435G>T
NG_008676.1:g.82773C>A
NG_098093.1:g.252G>T
NM_004369.4:c.8665C>AMANE SELECT
NM_057164.3:c.8164C>A
NM_057165.3:c.8065C>A
NM_057166.5:c.6844C>A
NM_057167.4:c.8047C>A
NP_004360.2:p.Pro2889Thr
NP_004360.2:p.Pro2889Thr
NP_476505.2:p.Pro2722Thr
NP_476506.2:p.Pro2689Thr
NP_476507.3:p.Pro2282Thr
NP_476508.2:p.Pro2683Thr
LRG_473t1:c.8665C>A
LRG_473:g.82773C>A
LRG_473p1:p.Pro2889Thr
NC_000002.11:g.238245078G>T
NM_004369.3:c.8665C>A

Protein change:

P2282T

Molecular consequence:

NM_004369.4:c.8665C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_057164.3:c.8164C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_057165.3:c.8065C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_057166.5:c.6844C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_057167.4:c.8047C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004235448	Revvity Omics, Revvity	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Mar 15, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004235448

Revvity Omics, Revvity

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Mar 15, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Revvity Omics, Revvity, SCV004235448.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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