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NM_002755.4(MAP2K1):c.291+14_291+19delinsTCTCAC AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 4, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003489704.1

Allele description [Variation Report for NM_002755.4(MAP2K1):c.291+14_291+19delinsTCTCAC]

NM_002755.4(MAP2K1):c.291+14_291+19delinsTCTCAC

Gene:
MAP2K1:mitogen-activated protein kinase kinase 1 [Gene - OMIM - HGNC]
Variant type:
Indel
Cytogenetic location:
15q22.31
Genomic location:
Preferred name:
NM_002755.4(MAP2K1):c.291+14_291+19delinsTCTCAC
HGVS:
  • NC_000015.10:g.66435251_66435256delinsTCTCAC
  • NG_008305.1:g.53379_53384delinsTCTCAC
  • NM_001411065.1:c.225+14_225+19delinsTCTCAC
  • NM_002755.4:c.291+14_291+19delinsTCTCACMANE SELECT
  • LRG_725:g.53379_53384delinsTCTCAC
  • NC_000015.9:g.66727589_66727594delinsTCTCAC
Molecular consequence:
  • NM_001411065.1:c.225+14_225+19delinsTCTCAC - intron variant - [Sequence Ontology: SO:0001627]
  • NM_002755.4:c.291+14_291+19delinsTCTCAC - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004241805Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Dec 4, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV004241805.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Variant summary: MAP2K1 c.291+14_291+19delinsTCTCAC alters a nucleotide located at a position not widely known to affect splicing. This variant is a multinucleotide combination of 291+14G>T, 291+15A>C, 291+17T>C, 291+19A>C. Several computational tools predict a significant impact on normal splicing: Three predict the variant creates a cryptic 3' acceptor site. One predict the variant strengthens a cryptic 3' acceptor site. However, these predictions have yet to be confirmed by functional studies. The variant was absent in 1606022 control chromosomes. The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. To our knowledge, no occurrence of c.291+14_291+19delinsTCTCAC in individuals affected with Cardiofaciocutaneous Syndrome and no experimental evidence demonstrating its impact on protein function have been reported. No submitters have cited clinical-significance assessments for this variant to ClinVar after 2014, however each component variant has been classified as likely benign/benign in Clinvar. Based on the evidence outlined above, the variant was classified as uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 14, 2024