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GRCh37/hg19 12q21.31(chr12:80647969-85713707)x1 AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 3, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003483158.1

Allele description [Variation Report for GRCh37/hg19 12q21.31(chr12:80647969-85713707)x1]

GRCh37/hg19 12q21.31(chr12:80647969-85713707)x1

Genes:
  • ALX1:ALX homeobox 1 [Gene - OMIM - HGNC]
  • PPFIA2:PTPRF interacting protein alpha 2 [Gene - OMIM - HGNC]
  • ACSS3:acyl-CoA synthetase short chain family member 3 [Gene - OMIM - HGNC]
  • CCDC59:coiled-coil domain containing 59 [Gene - OMIM - HGNC]
  • LRRIQ1:leucine rich repeats and IQ motif containing 1 [Gene - HGNC]
  • LIN7A:lin-7 homolog A, crumbs cell polarity complex component [Gene - OMIM - HGNC]
  • METTL25:methyltransferase like 25 [Gene - HGNC]
  • MYF5:myogenic factor 5 [Gene - OMIM - HGNC]
  • MYF6:myogenic factor 6 [Gene - OMIM - HGNC]
  • OTOGL:otogelin like [Gene - OMIM - HGNC]
  • PTPRQ:protein tyrosine phosphatase receptor type Q [Gene - OMIM - HGNC]
  • SLC6A15:solute carrier family 6 member 15 [Gene - OMIM - HGNC]
  • TSPAN19:tetraspanin 19 [Gene - HGNC]
  • TMTC2:transmembrane O-mannosyltransferase targeting cadherins 2 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
12q21.31
Genomic location:
Chr12: 80647969 - 85713707 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 12q21.31(chr12:80647969-85713707)x1
HGVS:

    Condition(s)

    Synonyms:
    none provided
    Identifiers:
    MedGen: C3661900

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    Assertion and evidence details

    Help
    Submission AccessionSubmitterReview Status
    (Assertion method)    		Clinical Significance
    (Last evaluated)    		OriginMethodCitations
    SCV004231675Quest Diagnostics Nichols Institute San Juan Capistrano
    criteria provided, single submitter

    (ACMG/ClinGen CNV Guidelines, 2019)    		Uncertain significance
    (Aug 3, 2022)     		unknownclinical testing

    PubMed (1)
    [See all records that cite this PMID]

    Help

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

    Citations

    PubMed

    Technical standards for the interpretation and reporting of constitutional copy-number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen).

    Riggs ER, Andersen EF, Cherry AM, Kantarci S, Kearney H, Patel A, Raca G, Ritter DI, South ST, Thorland EC, Pineda-Alvarez D, Aradhya S, Martin CL.

    Genet Med. 2020 Feb;22(2):245-257. doi: 10.1038/s41436-019-0686-8. Epub 2019 Nov 6. Erratum in: Genet Med. 2021 Nov;23(11):2230. doi: 10.1038/s41436-021-01150-9.

    PubMed [citation]
    PMID:
    31690835
    PMCID:
    PMC7313390

    Details of each submission

    From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV004231675.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not providednot providednot providednot providedclinical testing PubMed (1)
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

    Last Updated: Feb 4, 2024