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NM_182961.4(SYNE1):c.26279G>A (p.Gly8760Glu) AND not provided

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Jun 22, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003482352.4

Allele description [Variation Report for NM_182961.4(SYNE1):c.26279G>A (p.Gly8760Glu)]

NM_182961.4(SYNE1):c.26279G>A (p.Gly8760Glu)

Genes:
ESR1:estrogen receptor 1 [Gene - OMIM - HGNC]
SYNE1:spectrin repeat containing nuclear envelope protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6q25.2
Genomic location:
Preferred name:
NM_182961.4(SYNE1):c.26279G>A (p.Gly8760Glu)
HGVS:
  • NC_000006.12:g.152122551C>T
  • NG_008493.2:g.470861C>T
  • NG_012855.2:g.519849G>A
  • NM_001328100.2:c.851-2715C>T
  • NM_001347701.2:c.*90G>A
  • NM_001347702.2:c.2813G>A
  • NM_033071.5:c.26135G>A
  • NM_182961.4:c.26279G>AMANE SELECT
  • NP_001334631.1:p.Gly938Glu
  • NP_149062.1:p.Gly8712Glu
  • NP_149062.2:p.Gly8712Glu
  • NP_892006.3:p.Gly8760Glu
  • LRG_427t1:c.26279G>A
  • LRG_427t2:c.26135G>A
  • LRG_427:g.519849G>A
  • LRG_427p1:p.Gly8760Glu
  • LRG_427p2:p.Gly8712Glu
  • LRG_992:g.470861C>T
  • NC_000006.11:g.152443686C>T
  • NM_033071.3:c.26135G>A
  • NM_182961.2:c.26279G>A
Protein change:
G8712E
Links:
dbSNP: rs747635401
NCBI 1000 Genomes Browser:
rs747635401
Molecular consequence:
  • NM_001347701.2:c.*90G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001328100.2:c.851-2715C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001347702.2:c.2813G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_033071.5:c.26135G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_182961.4:c.26279G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004229286Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)
Uncertain significance
(Jan 18, 2023)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV004237984Revvity Omics, Revvity
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Jun 22, 2023)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Athena Diagnostics, SCV004229286.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

Available data are insufficient to determine the clinical significance of the variant at this time. The frequency of this variant in the general population is uninformative in assessment of its pathogenicity (http://gnomad.broadinstitute.org). Computational tools disagree on the variant's effect on normal protein function.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Revvity Omics, Revvity, SCV004237984.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024