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NM_000162.5(GCK):c.483G>A (p.Lys161=) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 29, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003482231.2

Allele description [Variation Report for NM_000162.5(GCK):c.483G>A (p.Lys161=)]

NM_000162.5(GCK):c.483G>A (p.Lys161=)

Gene:
GCK:glucokinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7p13
Genomic location:
Preferred name:
NM_000162.5(GCK):c.483G>A (p.Lys161=)
Other names:
NM_000162.5(GCK):c.483G>A; p.Lys161=
HGVS:
  • NC_000007.14:g.44150956C>T
  • NG_008847.2:g.52215G>A
  • NM_000162.5:c.483G>AMANE SELECT
  • NM_001354800.1:c.483G>A
  • NM_033507.3:c.486G>A
  • NM_033508.3:c.480G>A
  • NP_000153.1:p.Lys161=
  • NP_001341729.1:p.Lys161=
  • NP_277042.1:p.Lys162=
  • NP_277043.1:p.Lys160=
  • LRG_1074t1:c.483G>A
  • LRG_1074t2:c.486G>A
  • LRG_1074:g.52215G>A
  • LRG_1074p1:p.Lys161=
  • LRG_1074p2:p.Lys162=
  • NC_000007.13:g.44190555C>T
  • NM_000162.3:c.483G>A
Links:
dbSNP: rs193922302
NCBI 1000 Genomes Browser:
rs193922302
Molecular consequence:
  • NM_000162.5:c.483G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001354800.1:c.483G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_033507.3:c.486G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_033508.3:c.480G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004229663Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)
Pathogenic
(Aug 29, 2023)
unknownclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Maturity-onset diabetes of the young in children with incidental hyperglycemia: a multicenter Italian study of 172 families.

Lorini R, Klersy C, d'Annunzio G, Massa O, Minuto N, Iafusco D, Bellannè-Chantelot C, Frongia AP, Toni S, Meschi F, Cerutti F, Barbetti F; Italian Society of Pediatric Endocrinology and Diabetology (ISPED) Study Group..

Diabetes Care. 2009 Oct;32(10):1864-6. doi: 10.2337/dc08-2018. Epub 2009 Jun 29.

PubMed [citation]
PMID:
19564454
PMCID:
PMC2752915

Maturity onset diabetes of the young (MODY) in Chinese children: genes and clinical phenotypes.

Ming-Qiang Z, Yang-Li D, Ke H, Wei W, Jun-Fen F, Chao-Chun Z, Guan-Ping D.

J Pediatr Endocrinol Metab. 2019 Jul 26;32(7):759-765. doi: 10.1515/jpem-2018-0446.

PubMed [citation]
PMID:
31216263
See all PubMed Citations (3)

Details of each submission

From Athena Diagnostics, SCV004229663.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

This variant has been identified in multiple unrelated individuals with clinical features associated with this gene and appears to segregate with disease in at least one family. This variant has not been reported in large, multi-ethnic general populations (http://gnomad.broadinstitute.org). Assessment of experimental evidence suggests this variant results in abnormal protein function. (Personal communication related to ClinVar ID: 36224, Accession: SCV003932645.1)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024