U.S. flag

An official website of the United States government

NM_000527.5(LDLR):c.1055G>T (p.Cys352Phe) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jun 12, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003477852.1

Allele description [Variation Report for NM_000527.5(LDLR):c.1055G>T (p.Cys352Phe)]

NM_000527.5(LDLR):c.1055G>T (p.Cys352Phe)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.1055G>T (p.Cys352Phe)
HGVS:
  • NC_000019.10:g.11110766G>T
  • NG_009060.1:g.26386G>T
  • NM_000527.4:c.1055G>T
  • NM_000527.5:c.1055G>TMANE SELECT
  • NM_001195798.2:c.1055G>T
  • NM_001195799.2:c.932G>T
  • NM_001195800.2:c.551G>T
  • NM_001195803.2:c.674G>T
  • NP_000518.1:p.Cys352Phe
  • NP_001182727.1:p.Cys352Phe
  • NP_001182728.1:p.Cys311Phe
  • NP_001182729.1:p.Cys184Phe
  • NP_001182732.1:p.Cys225Phe
  • LRG_274t1:c.1055G>T
  • LRG_274:g.26386G>T
  • NC_000019.9:g.11221442G>T
  • c.1055G>T
Protein change:
C184F
Links:
LDLR-LOVD, British Heart Foundation: LDLR_001340; dbSNP: rs193922566
NCBI 1000 Genomes Browser:
rs193922566
Molecular consequence:
  • NM_000527.5:c.1055G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195798.2:c.1055G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195799.2:c.932G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195800.2:c.551G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195803.2:c.674G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004219933Quest Diagnostics Nichols Institute San Juan Capistrano
criteria provided, single submitter

(Quest Diagnostics criteria)
Likely pathogenic
(Jun 12, 2023)
unknownclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Molecular spectrum of autosomal dominant hypercholesterolemia in France.

Marduel M, Carrié A, Sassolas A, Devillers M, Carreau V, Di Filippo M, Erlich D, Abifadel M, Marques-Pinheiro A, Munnich A, Junien C; French ADH Research Network., Boileau C, Varret M, Rabès JP.

Hum Mutat. 2010 Nov;31(11):E1811-24. doi: 10.1002/humu.21348.

PubMed [citation]
PMID:
20809525
PMCID:
PMC3152176

Detection of Familial Hypercholesterolemia Using Next Generation Sequencing in Two Population-Based Cohorts.

Kim HN, Kweon SS, Shin MH.

Chonnam Med J. 2018 Jan;54(1):31-35. doi: 10.4068/cmj.2018.54.1.31. Epub 2018 Jan 25.

PubMed [citation]
PMID:
29399563
PMCID:
PMC5794476
See all PubMed Citations (3)

Details of each submission

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV004219933.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

The LDLR c.1055G>T (p.Cys352Phe) variant has been reported in the published literature in in individuals with familial hypercholesterolemia (PMID: 20809525 (2010) and 29399563 (2018)). This variant has not been reported in large, multi-ethnic general populations (Genome Aggregation Database, http://gnomad.broadinstitute.org). Analysis of this variant using bioinformatics tools for the prediction of the effect of amino acid changes on protein structure and function yielded predictions that this variant is damaging. Based on the available information, this variant is classified as likely pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024