NM_001083116.3(PRF1):c.1628dup (p.Glu545fs) AND Aplastic anemia

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Mar 9, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003473859.2

Allele description [Variation Report for NM_001083116.3(PRF1):c.1628dup (p.Glu545fs)]

NM_001083116.3(PRF1):c.1628dup (p.Glu545fs)

Gene:

PRF1:perforin 1 [Gene - OMIM - HGNC]

Variant type:

Duplication

Cytogenetic location:

10q22.1

Genomic location:

Preferred name:

NM_001083116.3(PRF1):c.1628dup (p.Glu545fs)

HGVS:

NC_000010.11:g.70598093dup
NG_009615.1:g.9683dup
NM_001083116.3:c.1628dupMANE SELECT
NM_005041.6:c.1628dup
NP_001076585.1:p.Glu545fs
NP_005032.2:p.Glu545fs
LRG_94t1:c.1628dup
LRG_94:g.9683dup
NC_000010.10:g.72357848_72357849insA
NC_000010.10:g.72357849dup
NM_001083116.1:c.1628dupT

Protein change:

E545fs

Links:

dbSNP: rs1564723449

NCBI 1000 Genomes Browser:

rs1564723449

Molecular consequence:

NM_001083116.3:c.1628dup - frameshift variant - [Sequence Ontology: SO:0001589]
NM_005041.6:c.1628dup - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:: Aplastic anemia
Identifiers:: MONDO: MONDO:0015909; MedGen: C0002874; Orphanet: 88; OMIM: 609135; Human Phenotype Ontology: HP:0001915

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004204203	Baylor Genetics	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Mar 9, 2024)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004204203

Baylor Genetics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Mar 9, 2024)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Baylor Genetics, SCV004204203.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

ClinVar

Relating variation to medicine