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NM_000402.4(G6PD):c.1039G>A (p.Glu347Lys) AND Malaria, susceptibility to

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 16, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003466849.2

Allele description [Variation Report for NM_000402.4(G6PD):c.1039G>A (p.Glu347Lys)]

NM_000402.4(G6PD):c.1039G>A (p.Glu347Lys)

Gene:
G6PD:glucose-6-phosphate dehydrogenase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_000402.4(G6PD):c.1039G>A (p.Glu347Lys)
Other names:
G6PD, GLU317LYS; G6PD Jamnaga; G6PD Kalyan; G6PD Kerala; G6PD Kerala-Kalyan; G6PD Rohini; p.Glu317Lys
HGVS:
  • NC_000023.11:g.154533044C>T
  • NG_009015.2:g.19529G>A
  • NM_000402.4:c.1039G>A
  • NM_001042351.3:c.949G>A
  • NM_001360016.2:c.949G>AMANE SELECT
  • NP_000393.4:p.Glu347Lys
  • NP_001035810.1:p.Glu317Lys
  • NP_001346945.1:p.Glu317Lys
  • NC_000023.10:g.153761259C>T
  • NM_000402.3:c.1039G>A
  • NM_001042351.1:c.949G>A
  • NM_001042351.2:c.949G>A
  • NM_001042351.3:c.949G>A
  • NM_001360016.2:c.949G>A
Protein change:
E317K; GLU317LYS
Links:
OMIM: 305900.0042; dbSNP: rs137852339
NCBI 1000 Genomes Browser:
rs137852339
Molecular consequence:
  • NM_000402.4:c.1039G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001042351.3:c.949G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001360016.2:c.949G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Malaria, susceptibility to
Identifiers:
MONDO: MONDO:0021024; MedGen: C1970028; Orphanet: 673; OMIM: 611162

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004195403Baylor Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Mar 16, 2024) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Baylor Genetics, SCV004195403.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 18, 2024