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NM_000179.3(MSH6):c.3851_3860del (p.Thr1284fs) AND Lynch syndrome 5

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 25, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003455562.1

Allele description [Variation Report for NM_000179.3(MSH6):c.3851_3860del (p.Thr1284fs)]

NM_000179.3(MSH6):c.3851_3860del (p.Thr1284fs)

Gene:
MSH6:mutS homolog 6 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
2p16.3
Genomic location:
Preferred name:
NM_000179.3(MSH6):c.3851_3860del (p.Thr1284fs)
HGVS:
  • NC_000002.12:g.47806501_47806510del
  • NG_007111.1:g.28355_28364del
  • NG_008397.1:g.104168_104177del
  • NM_000179.3:c.3851_3860delMANE SELECT
  • NM_001281492.2:c.3461_3470del
  • NM_001281493.2:c.2945_2954del
  • NM_001281494.2:c.2945_2954del
  • NM_001406795.1:c.3947_3956delCGTTCCTCTA
  • NM_001406796.1:c.3851_3860delCGTTCCTCTA
  • NM_001406797.1:c.3554_3563delCGTTCCTCTA
  • NM_001406798.1:c.3677_3686delCGTTCCTCTA
  • NM_001406799.1:c.3326_3335delCGTTCCTCTA
  • NM_001406800.1:c.3838_3847delCGTTCCTCTA
  • NM_001406801.1:c.3554_3563delCGTTCCTCTA
  • NM_001406803.1:c.2987_2996delCGTTCCTCTA
  • NM_001406804.1:c.3773_3782delCGTTCCTCTA
  • NM_001406805.1:c.3554_3563delCGTTCCTCTA
  • NM_001406806.1:c.3326_3335delCGTTCCTCTA
  • NM_001406807.1:c.3326_3335delCGTTCCTCTA
  • NM_001406808.1:c.3851_3860delCGTTCCTCTA
  • NM_001406809.1:c.3851_3860delCGTTCCTCTA
  • NM_001406811.1:c.2945_2954delCGTTCCTCTA
  • NM_001406812.1:c.2945_2954delCGTTCCTCTA
  • NM_001406813.1:c.3857_3866delCGTTCCTCTA
  • NM_001406814.1:c.2945_2954delCGTTCCTCTA
  • NM_001406815.1:c.2945_2954delCGTTCCTCTA
  • NM_001406816.1:c.2945_2954delCGTTCCTCTA
  • NM_001406817.1:c.2285_2294delCGTTCCTCTA
  • NM_001406818.1:c.3554_3563delCGTTCCTCTA
  • NM_001406819.1:c.3554_3563delCGTTCCTCTA
  • NM_001406820.1:c.3554_3563delCGTTCCTCTA
  • NM_001406821.1:c.3554_3563delCGTTCCTCTA
  • NM_001406822.1:c.3554_3563delCGTTCCTCTA
  • NM_001406823.1:c.2945_2954delCGTTCCTCTA
  • NM_001406824.1:c.3554_3563delCGTTCCTCTA
  • NM_001406825.1:c.3554_3563delCGTTCCTCTA
  • NM_001406826.1:c.3683_3692delCGTTCCTCTA
  • NM_001406827.1:c.3554_3563delCGTTCCTCTA
  • NM_001406828.1:c.3554_3563delCGTTCCTCTA
  • NM_001406829.1:c.2945_2954delCGTTCCTCTA
  • NM_001406830.1:c.3554_3563delCGTTCCTCTA
  • NM_001406831.1:c.632_641delCGTTCCTCTA
  • NM_001406832.1:c.698_707delCGTTCCTCTA
  • NM_001407362.1:c.1796_1805delCGTTCCTCTA
  • NP_000170.1:p.Thr1284Ilefs
  • NP_000170.1:p.Thr1284fs
  • NP_001268421.1:p.Thr1154fs
  • NP_001268422.1:p.Thr982fs
  • NP_001268423.1:p.Thr982fs
  • NP_001393724.1:p.Thr1316Ilefs
  • NP_001393725.1:p.Thr1284Ilefs
  • NP_001393726.1:p.Thr1185Ilefs
  • NP_001393727.1:p.Thr1226Ilefs
  • NP_001393728.1:p.Thr1109Ilefs
  • NP_001393729.1:p.Arg1280Terfs
  • NP_001393730.1:p.Thr1185Ilefs
  • NP_001393732.1:p.Thr996Ilefs
  • NP_001393733.1:p.Thr1258Ilefs
  • NP_001393734.1:p.Thr1185Ilefs
  • NP_001393735.1:p.Thr1109Ilefs
  • NP_001393736.1:p.Thr1109Ilefs
  • NP_001393737.1:p.Thr1284Ilefs
  • NP_001393738.1:p.Thr1284Ilefs
  • NP_001393740.1:p.Thr982Ilefs
  • NP_001393741.1:p.Thr982Ilefs
  • NP_001393742.1:p.Thr1286Ilefs
  • NP_001393743.1:p.Thr982Ilefs
  • NP_001393744.1:p.Thr982Ilefs
  • NP_001393745.1:p.Thr982Ilefs
  • NP_001393746.1:p.Thr762Ilefs
  • NP_001393747.1:p.Thr1185Ilefs
  • NP_001393748.1:p.Thr1185Ilefs
  • NP_001393749.1:p.Thr1185Ilefs
  • NP_001393750.1:p.Thr1185Ilefs
  • NP_001393751.1:p.Thr1185Ilefs
  • NP_001393752.1:p.Thr982Ilefs
  • NP_001393753.1:p.Thr1185Ilefs
  • NP_001393754.1:p.Thr1185Ilefs
  • NP_001393755.1:p.Thr1228Ilefs
  • NP_001393756.1:p.Thr1185Ilefs
  • NP_001393757.1:p.Thr1185Ilefs
  • NP_001393758.1:p.Thr982Ilefs
  • NP_001393759.1:p.Thr1185Ilefs
  • NP_001393760.1:p.Thr211Ilefs
  • NP_001393761.1:p.Thr233Ilefs
  • NP_001394291.1:p.Thr599Ilefs
  • LRG_219t1:c.3851_3860del
  • LRG_219:g.28355_28364del
  • LRG_219p1:p.Thr1284Ilefs
  • NC_000002.11:g.48033638_48033647del
  • NC_000002.11:g.48033640_48033649del
  • NM_000179.2:c.3851_3860delCGTTCCTCTA
  • NR_176256.1:n.2781_2790delCGTTCCTCTA
  • NR_176257.1:n.4112_4121delCGTTCCTCTA
  • NR_176258.1:n.4041_4050delCGTTCCTCTA
  • NR_176259.1:n.3940_3949delCGTTCCTCTA
  • NR_176260.1:n.1885_1894delCGTTCCTCTA
  • NR_176261.1:n.3822_3831delCGTTCCTCTA
Protein change:
T1154fs
Molecular consequence:
  • NM_000179.3:c.3851_3860del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001281492.2:c.3461_3470del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001281493.2:c.2945_2954del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001281494.2:c.2945_2954del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406795.1:c.3947_3956delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406796.1:c.3851_3860delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406797.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406798.1:c.3677_3686delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406799.1:c.3326_3335delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406800.1:c.3838_3847delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406801.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406803.1:c.2987_2996delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406804.1:c.3773_3782delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406805.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406806.1:c.3326_3335delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406807.1:c.3326_3335delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406808.1:c.3851_3860delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406809.1:c.3851_3860delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406811.1:c.2945_2954delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406812.1:c.2945_2954delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406813.1:c.3857_3866delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406814.1:c.2945_2954delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406815.1:c.2945_2954delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406816.1:c.2945_2954delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406817.1:c.2285_2294delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406818.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406819.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406820.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406821.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406822.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406823.1:c.2945_2954delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406824.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406825.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406826.1:c.3683_3692delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406827.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406828.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406829.1:c.2945_2954delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406830.1:c.3554_3563delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406831.1:c.632_641delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406832.1:c.698_707delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001407362.1:c.1796_1805delCGTTCCTCTA - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001406800.1:c.3838_3847delCGTTCCTCTA - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Lynch syndrome 5 (LYNCH5)
Synonyms:
Colorectal cancer, hereditary nonpolyposis, type 5; Hereditary non-polyposis colorectal cancer, type 5
Identifiers:
MONDO: MONDO:0013710; MedGen: C1833477; Orphanet: 144; OMIM: 614350

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004187098Myriad Genetics, Inc.
criteria provided, single submitter

(Myriad Autosomal Dominant, Autosomal Recessive and X-Linked Classification Criteria (2023))		Pathogenic
(Aug 25, 2023) 		unknownclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Myriad Genetics, Inc., SCV004187098.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered pathogenic. This variant creates a frameshift predicted to result in premature protein truncation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024