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NM_000179.3(MSH6):c.2045_2046del (p.Ser682fs) AND Lynch syndrome 5

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 16, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003450937.1

Allele description [Variation Report for NM_000179.3(MSH6):c.2045_2046del (p.Ser682fs)]

NM_000179.3(MSH6):c.2045_2046del (p.Ser682fs)

Gene:
MSH6:mutS homolog 6 [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
2p16.3
Genomic location:
Preferred name:
NM_000179.3(MSH6):c.2045_2046del (p.Ser682fs)
HGVS:
  • NC_000002.12:g.47800024CT[2]
  • NG_007111.1:g.21878CT[2]
  • NM_000179.3:c.2045_2046delMANE SELECT
  • NM_001281492.2:c.1655_1656del
  • NM_001281493.2:c.1139_1140del
  • NM_001281494.2:c.1139_1140del
  • NP_000170.1:p.Ser682fs
  • NP_001268421.1:p.Ser552fs
  • NP_001268422.1:p.Ser380fs
  • NP_001268423.1:p.Ser380fs
  • LRG_219:g.21878CT[2]
  • NC_000002.11:g.48027163CT[2]
  • NC_000002.11:g.48027163_48027164del
  • NM_000179.2:c.2045_2046delCT
Protein change:
S380fs
Links:
dbSNP: rs267608057
NCBI 1000 Genomes Browser:
rs267608057
Molecular consequence:
  • NM_000179.3:c.2045_2046del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001281492.2:c.1655_1656del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001281493.2:c.1139_1140del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001281494.2:c.1139_1140del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Lynch syndrome 5 (LYNCH5)
Synonyms:
Colorectal cancer, hereditary nonpolyposis, type 5; Hereditary non-polyposis colorectal cancer, type 5
Identifiers:
MONDO: MONDO:0013710; MedGen: C1833477; Orphanet: 144; OMIM: 614350

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004185670Myriad Genetics, Inc.
criteria provided, single submitter

(Myriad Autosomal Dominant, Autosomal Recessive and X-Linked Classification Criteria (2023))		Pathogenic
(Aug 16, 2023) 		unknownclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Myriad Genetics, Inc., SCV004185670.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered pathogenic. This variant creates a frameshift predicted to result in premature protein truncation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024