U.S. flag

An official website of the United States government

NM_000179.3(MSH6):c.3556+1G>A AND Lynch syndrome 5

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Aug 24, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003449150.1

Allele description [Variation Report for NM_000179.3(MSH6):c.3556+1G>A]

NM_000179.3(MSH6):c.3556+1G>A

Gene:
MSH6:mutS homolog 6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p16.3
Genomic location:
Preferred name:
NM_000179.3(MSH6):c.3556+1G>A
HGVS:
  • NC_000002.12:g.47805028G>A
  • NG_007111.1:g.26882G>A
  • NG_008397.1:g.105648C>T
  • NM_000179.3:c.3556+1G>AMANE SELECT
  • NM_001281492.2:c.3166+1G>A
  • NM_001281493.2:c.2650+1G>A
  • NM_001281494.2:c.2650+1G>A
  • NM_001406795.1:c.3652+1G>A
  • NM_001406796.1:c.3556+1G>A
  • NM_001406797.1:c.3259+1G>A
  • NM_001406798.1:c.3382+1G>A
  • NM_001406799.1:c.3031+1G>A
  • NM_001406800.1:c.3556+1G>A
  • NM_001406801.1:c.3259+1G>A
  • NM_001406802.1:c.3652+1G>A
  • NM_001406803.1:c.2692+1G>A
  • NM_001406804.1:c.3478+1G>A
  • NM_001406805.1:c.3259+1G>A
  • NM_001406806.1:c.3031+1G>A
  • NM_001406807.1:c.3031+1G>A
  • NM_001406808.1:c.3556+1G>A
  • NM_001406809.1:c.3556+1G>A
  • NM_001406811.1:c.2650+1G>A
  • NM_001406812.1:c.2650+1G>A
  • NM_001406813.1:c.3562+1G>A
  • NM_001406814.1:c.2650+1G>A
  • NM_001406815.1:c.2650+1G>A
  • NM_001406816.1:c.2650+1G>A
  • NM_001406817.1:c.1990+1G>A
  • NM_001406818.1:c.3259+1G>A
  • NM_001406819.1:c.3259+1G>A
  • NM_001406820.1:c.3259+1G>A
  • NM_001406821.1:c.3259+1G>A
  • NM_001406822.1:c.3259+1G>A
  • NM_001406823.1:c.2650+1G>A
  • NM_001406824.1:c.3259+1G>A
  • NM_001406825.1:c.3259+1G>A
  • NM_001406826.1:c.3388+1G>A
  • NM_001406827.1:c.3259+1G>A
  • NM_001406828.1:c.3259+1G>A
  • NM_001406829.1:c.2650+1G>A
  • NM_001406830.1:c.3259+1G>A
  • NM_001406831.1:c.337+1G>A
  • NM_001406832.1:c.403+1G>A
  • NM_001407362.1:c.1501+1G>A
  • LRG_219t1:c.3556+1G>A
  • LRG_219:g.26882G>A
  • NC_000002.11:g.48032167G>A
  • NM_000179.2:c.3556+1G>A
Links:
dbSNP: rs1060502926
NCBI 1000 Genomes Browser:
rs1060502926
Molecular consequence:
  • NM_000179.3:c.3556+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001281492.2:c.3166+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001281493.2:c.2650+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001281494.2:c.2650+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406795.1:c.3652+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406796.1:c.3556+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406797.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406798.1:c.3382+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406799.1:c.3031+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406800.1:c.3556+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406801.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406802.1:c.3652+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406803.1:c.2692+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406804.1:c.3478+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406805.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406806.1:c.3031+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406807.1:c.3031+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406808.1:c.3556+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406809.1:c.3556+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406811.1:c.2650+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406812.1:c.2650+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406813.1:c.3562+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406814.1:c.2650+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406815.1:c.2650+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406816.1:c.2650+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406817.1:c.1990+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406818.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406819.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406820.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406821.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406822.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406823.1:c.2650+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406824.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406825.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406826.1:c.3388+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406827.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406828.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406829.1:c.2650+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406830.1:c.3259+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406831.1:c.337+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406832.1:c.403+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001407362.1:c.1501+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:
Lynch syndrome 5 (LYNCH5)
Synonyms:
Colorectal cancer, hereditary nonpolyposis, type 5; Hereditary non-polyposis colorectal cancer, type 5
Identifiers:
MONDO: MONDO:0013710; MedGen: C1833477; Orphanet: 144; OMIM: 614350

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004189268Myriad Genetics, Inc.
criteria provided, single submitter

(Myriad Autosomal Dominant, Autosomal Recessive and X-Linked Classification Criteria (2023))		Likely pathogenic
(Aug 24, 2023) 		unknownclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Myriad Genetics, Inc., SCV004189268.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely pathogenic. This variant occurs within a consensus splice junction and is predicted to result in abnormal mRNA splicing of either an out-of-frame exon or an in-frame exon necessary for protein stability and/or normal function.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024