NM_000314.8(PTEN):c.801+1del AND Cowden syndrome 1

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Sep 29, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003449106.1

Allele description [Variation Report for NM_000314.8(PTEN):c.801+1del]

NM_000314.8(PTEN):c.801+1del

Gene:

PTEN:phosphatase and tensin homolog [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

10q23.31

Genomic location:

Preferred name:

NM_000314.8(PTEN):c.801+1del

HGVS:

NC_000010.11:g.87958020del
NG_007466.2:g.99582del
NM_000314.8:c.801+1delMANE SELECT
NM_001304717.5:c.1321+1del
NM_001304718.2:c.210+1del
LRG_311t1:c.801+1del
LRG_311:g.99582del
NC_000010.10:g.89717776del
NC_000010.10:g.89717777del
NC_000010.11:g.87958020delG
NM_000314.4:c.801+1del
NM_000314.4:c.801+1delG

Links:

dbSNP: rs1060500110

NCBI 1000 Genomes Browser:

rs1060500110

Molecular consequence:

NM_000314.8:c.801+1del - splice donor variant - [Sequence Ontology: SO:0001575]
NM_001304717.5:c.1321+1del - splice donor variant - [Sequence Ontology: SO:0001575]
NM_001304718.2:c.210+1del - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:: Cowden syndrome 1 (CWS1)
Identifiers:: MONDO: MONDO:0008021; MedGen: CN072330; OMIM: 158350

Recent activity

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Vaccinium gaultheriifolium internal transcribed spacer 1, partial sequence; 5.8S...
Vaccinium gaultheriifolium internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence
gi|30408135|gb|AY274577.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004188786	Myriad Genetics, Inc.	criteria provided, single submitter (Myriad Autosomal Dominant, Autosomal Recessive and X-Linked Classification Criteria (2023))	Likely pathogenic (Sep 29, 2023)	unknown	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004188786

Myriad Genetics, Inc.

criteria provided, single submitter

(Myriad Autosomal Dominant, Autosomal Recessive and X-Linked Classification Criteria (2023))

Likely pathogenic
(Sep 29, 2023)

unknown

clinical testing

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Myriad Genetics, Inc., SCV004188786.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is considered likely pathogenic. This variant occurs within a consensus splice junction and is predicted to result in abnormal mRNA splicing of either an out-of-frame exon or an in-frame exon necessary for protein stability and/or normal function.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 8, 2024

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