NM_001374828.1(ARID1B):c.3061C>T (p.Gln1021Ter) AND Coffin-Siris syndrome 1

Germline classification:: Pathogenic (1 submission)
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003444085.1

Allele description [Variation Report for NM_001374828.1(ARID1B):c.3061C>T (p.Gln1021Ter)]

NM_001374828.1(ARID1B):c.3061C>T (p.Gln1021Ter)

Gene:

ARID1B:AT-rich interaction domain 1B [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

6q25.3

Genomic location:

Preferred name:

NM_001374828.1(ARID1B):c.3061C>T (p.Gln1021Ter)

HGVS:

NC_000006.12:g.157148923C>T
NG_066624.1:g.377898C>T
NM_001346813.1:c.2812C>T
NM_001363725.2:c.562C>T
NM_001371656.1:c.3100C>T
NM_001374820.1:c.3100C>T
NM_001374828.1:c.3061C>TMANE SELECT
NM_017519.3:c.3061C>T
NM_020732.3:c.2851C>T
NM_175863.2:c.2638C>T
NP_001333742.1:p.Gln938Ter
NP_001350654.1:p.Gln188Ter
NP_001358585.1:p.Gln1034Ter
NP_001361749.1:p.Gln1034Ter
NP_001361757.1:p.Gln1021Ter
NP_059989.3:p.Gln1021Ter
NP_065783.3:p.Gln951Ter
NP_787059.2:p.Gln880Ter
NC_000006.11:g.157470057C>T

Protein change:

Q1021*

Molecular consequence:

NM_001346813.1:c.2812C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_001363725.2:c.562C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_001371656.1:c.3100C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_001374820.1:c.3100C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_001374828.1:c.3061C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_017519.3:c.3061C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_020732.3:c.2851C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_175863.2:c.2638C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:: Coffin-Siris syndrome 1 (CSS1)
Synonyms:: Mental retardation, autosomal dominant 12
Identifiers:: MONDO: MONDO:0007617; MedGen: C3281201; Orphanet: 1465; OMIM: 135900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004171159	Institute of Human Genetics, University Hospital of Duesseldorf	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic	germline	not provided	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004171159

Institute of Human Genetics, University Hospital of Duesseldorf

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic

germline

not provided

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	not provided

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Institute of Human Genetics, University Hospital of Duesseldorf, SCV004171159.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	not provided	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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