U.S. flag

An official website of the United States government

NM_020863.4(ZFAT):c.1409C>G (p.Ser470Cys) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (2 submissions)
Last evaluated:
Nov 1, 2022
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003437202.11

Allele description [Variation Report for NM_020863.4(ZFAT):c.1409C>G (p.Ser470Cys)]

NM_020863.4(ZFAT):c.1409C>G (p.Ser470Cys)

Genes:
LOC130001238:ATAC-STARR-seq lymphoblastoid active region 28015 [Gene]
ZFAT:zinc finger and AT-hook domain containing [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q24.22
Genomic location:
Preferred name:
NM_020863.4(ZFAT):c.1409C>G (p.Ser470Cys)
HGVS:
  • NC_000008.11:g.134602310G>C
  • NG_016356.2:g.115740C>G
  • NM_001029939.4:c.1373C>G
  • NM_001167583.3:c.1373C>G
  • NM_001174157.2:c.1223C>G
  • NM_001174158.2:c.1373C>G
  • NM_001289394.2:c.1373C>G
  • NM_020863.4:c.1409C>GMANE SELECT
  • NP_001025110.2:p.Ser458Cys
  • NP_001161055.1:p.Ser458Cys
  • NP_001167628.1:p.Ser408Cys
  • NP_001167629.1:p.Ser458Cys
  • NP_001276323.1:p.Ser458Cys
  • NP_065914.2:p.Ser470Cys
  • NC_000008.10:g.135614553G>C
  • NG_016356.1:g.115740C>G
  • NM_001029939.3:c.1373C>G
  • NR_110323.2:n.1577C>G
Protein change:
S408C
Links:
dbSNP: rs112892337
NCBI 1000 Genomes Browser:
rs112892337
Molecular consequence:
  • NM_001029939.4:c.1373C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001167583.3:c.1373C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001174157.2:c.1223C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001174158.2:c.1373C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001289394.2:c.1373C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_020863.4:c.1409C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NR_110323.2:n.1577C>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004163283CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Nov 1, 2022)
germlineclinical testing

Citation Link,

SCV005196131Breakthrough Genomics, Breakthrough Genomics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significancegermlinenot provided

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing, not provided

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From CeGaT Center for Human Genetics Tuebingen, SCV004163283.10

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

ZFAT: BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

From Breakthrough Genomics, Breakthrough Genomics, SCV005196131.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024