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NM_015910.7(WDPCP):c.1094A>G (p.Glu365Gly) AND WDPCP-related disorder

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 26, 2024
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003409537.6

Allele description [Variation Report for NM_015910.7(WDPCP):c.1094A>G (p.Glu365Gly)]

NM_015910.7(WDPCP):c.1094A>G (p.Glu365Gly)

Gene:
WDPCP:WD repeat containing planar cell polarity effector [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p15
Genomic location:
Preferred name:
NM_015910.7(WDPCP):c.1094A>G (p.Glu365Gly)
HGVS:
  • NC_000002.12:g.63404389T>C
  • NG_028144.2:g.441437A>G
  • NM_001042692.3:c.617A>G
  • NM_001354044.2:c.1022A>G
  • NM_001354045.2:c.1094A>G
  • NM_015910.7:c.1094A>GMANE SELECT
  • NP_001036157.1:p.Glu206Gly
  • NP_001340973.1:p.Glu341Gly
  • NP_001340974.1:p.Glu365Gly
  • NP_056994.3:p.Glu365Gly
  • NC_000002.11:g.63631524T>C
  • NM_015910.5:c.1094A>G
  • NR_122106.2:n.741A>G
  • NR_148704.2:n.1552A>G
  • NR_148705.2:n.1300A>G
Protein change:
E206G
Links:
dbSNP: rs201662623
NCBI 1000 Genomes Browser:
rs201662623
Molecular consequence:
  • NM_001042692.3:c.617A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354044.2:c.1022A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354045.2:c.1094A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_015910.7:c.1094A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NR_122106.2:n.741A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148704.2:n.1552A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148705.2:n.1300A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
WDPCP-related disorder
Synonyms:
WDPCP-related condition
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004115322PreventionGenetics, part of Exact Sciences
no assertion criteria provided
Uncertain significance
(Aug 26, 2024)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004115322.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The WDPCP c.1094A>G variant is predicted to result in the amino acid substitution p.Glu365Gly. This variant has been reported in the heterozygous state in a child with Joubert syndrome; however, the authors did not identify a second plausible pathogenic variant in WDPCP (See Supplemental Table 1 in Toriyama et al. 2016. PubMed ID: 27158779). This variant is reported in 0.021% of alleles in individuals of European (non-Finnish) descent in gnomAD. At this time the clinical significance of this variant is uncertain due to the absence of conclusive functional and genetic evidence.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024