NM_015046.7(SETX):c.4197A>G (p.Thr1399=) AND not specified

Germline classification:: Likely benign (1 submission)
Last evaluated:: Oct 13, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003403306.1

Allele description [Variation Report for NM_015046.7(SETX):c.4197A>G (p.Thr1399=)]

NM_015046.7(SETX):c.4197A>G (p.Thr1399=)

Gene:

SETX:senataxin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

9q34.13

Genomic location:

Preferred name:

NM_015046.7(SETX):c.4197A>G (p.Thr1399=)

HGVS:

NC_000009.12:g.132327401T>C
NG_007946.1:g.32585A>G
NM_001351527.2:c.4197A>G
NM_001351528.2:c.4197A>G
NM_015046.7:c.4197A>GMANE SELECT
NP_001338456.1:p.Thr1399=
NP_001338457.1:p.Thr1399=
NP_055861.3:p.Thr1399=
LRG_268t1:c.4197A>G
LRG_268:g.32585A>G
NC_000009.11:g.135202788T>C
NM_015046.5:c.4197A>G

Links:

dbSNP: rs148078248

NCBI 1000 Genomes Browser:

rs148078248

Molecular consequence:

NM_001351527.2:c.4197A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001351528.2:c.4197A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_015046.7:c.4197A>G - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004122888	Women's Health and Genetics/Laboratory Corporation of America, LabCorp	criteria provided, single submitter (LabCorp Variant Classification Summary - May 2015)	Likely benign (Oct 13, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004122888

Women's Health and Genetics/Laboratory Corporation of America, LabCorp

criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)

Likely benign
(Oct 13, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV004122888.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 20, 2024

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