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NM_000166.6(GJB1):c.563CCGTCTTCA[1] (p.188TVF[1]) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 11, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003401460.1

Allele description [Variation Report for NM_000166.6(GJB1):c.563CCGTCTTCA[1] (p.188TVF[1])]

NM_000166.6(GJB1):c.563CCGTCTTCA[1] (p.188TVF[1])

Gene:
GJB1:gap junction protein beta 1 [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
Xq13.1
Genomic location:
Preferred name:
NM_000166.6(GJB1):c.563CCGTCTTCA[1] (p.188TVF[1])
HGVS:
  • NC_000023.11:g.71224270CCGTCTTCA[1]
  • NG_008357.1:g.14059CCGTCTTCA[1]
  • NM_000166.6:c.563CCGTCTTCA[1]MANE SELECT
  • NM_001097642.3:c.563CCGTCTTCA[1]
  • NP_000157.1:p.188TVF[1]
  • NP_001091111.1:p.188TVF[1]
  • LRG_245t2:c.563CCGTCTTCA[1]
  • LRG_245:g.14059CCGTCTTCA[1]
  • LRG_245p2:p.188TVF[1]
  • NC_000023.10:g.70444120CCGTCTTCA[1]
  • NM_000166.5:c.572_580del
  • NM_000166.5:c.572_580delCCGTCTTCA
  • NM_000166.6:c.572_580delCCGTCTTCAMANE SELECT
Links:
dbSNP: rs116840823
NCBI 1000 Genomes Browser:
rs116840823
Molecular consequence:
  • NM_000166.6:c.563CCGTCTTCA[1] - inframe_deletion - [Sequence Ontology: SO:0001822]
  • NM_001097642.3:c.563CCGTCTTCA[1] - inframe_deletion - [Sequence Ontology: SO:0001822]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004122720Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Oct 11, 2023)
germlineclinical testing

PubMed (6)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Connexin32 and X-linked Charcot-Marie-Tooth disease.

Bone LJ, DeschĂȘnes SM, Balice-Gordon RJ, Fischbeck KH, Scherer SS.

Neurobiol Dis. 1997;4(3-4):221-30. Review.

PubMed [citation]
PMID:
9361298

Gap junction beta 1 (GJB1) gene mutations in Italian patients with X-linked Charcot-Marie-Tooth disease.

Mandich P, Grandis M, Geroldi A, Acquaviva M, Varese A, Gulli R, Ciotti P, Bellone E.

J Hum Genet. 2008;53(6):529-533. doi: 10.1007/s10038-008-0280-4. Epub 2008 Apr 1.

PubMed [citation]
PMID:
18379723
See all PubMed Citations (6)

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV004122720.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (6)

Description

Variant summary: GJB1 c.572_580delCCGTCTTCA (p.Thr191_Phe193del) results in an in-frame deletion that is predicted to remove three amino acids from the encoded protein. The variant was absent in 180670 control chromosomes (gnomAD). c.572_580delCCGTCTTCA has been reported in the literature in individuals affected with Charcot-Marie-Tooth disease X-linked dominant 1 (Bone_1997, Panosyan_2017, Record_2023). These data indicate that the variant may be associated with disease. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. However, other variants involved in the region (Thr191_Phe193), including missense mutations, duplications, deletions, and insertions, were found in patients affected with Charcot-Marie-Tooth disease X-linked dominant 1 in HGMD database, supporting this region is functional important in GJB1 protein. The following publications have been ascertained in the context of this evaluation (PMID: 9361298, 9888385, 28768847, 37284795, 17052905, 18379723). Two submitters have cited clinical-significance assessments for this variant to ClinVar after 2014. One submitter classified the variant as likely pathogenic, and one submitter classified the variant as uncertain significance. Based on the evidence outlined above, the variant was classified as VUS-possibly pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024