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NM_020988.3(GNAO1):c.625C>T (p.Arg209Cys) AND GNAO1-related disorder

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 10, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003401217.4

Allele description [Variation Report for NM_020988.3(GNAO1):c.625C>T (p.Arg209Cys)]

NM_020988.3(GNAO1):c.625C>T (p.Arg209Cys)

Gene:
GNAO1:G protein subunit alpha o1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q13
Genomic location:
Preferred name:
NM_020988.3(GNAO1):c.625C>T (p.Arg209Cys)
HGVS:
  • NC_000016.10:g.56336762C>T
  • NG_042800.1:g.150424C>T
  • NM_020988.3:c.625C>TMANE SELECT
  • NM_138736.3:c.625C>T
  • NP_066268.1:p.Arg209Cys
  • NP_620073.2:p.Arg209Cys
  • NC_000016.9:g.56370674C>T
  • NM_020988.2:c.625C>T
  • NM_138736.2:c.625C>T
  • P09471:p.Arg209Cys
Protein change:
R209C; ARG209CYS
Links:
UniProtKB: P09471#VAR_077337; OMIM: 139311.0006; dbSNP: rs886039494
NCBI 1000 Genomes Browser:
rs886039494
Molecular consequence:
  • NM_020988.3:c.625C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_138736.3:c.625C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
GNAO1-related disorder
Synonyms:
GNAO1-related condition
Identifiers:

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004111018PreventionGenetics, part of Exact Sciences
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Apr 10, 2023) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004111018.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

The GNAO1 c.625C>T variant is predicted to result in the amino acid substitution p.Arg209Cys. This variant has been reported as de novo in multiple individuals with intellectual disability, developmental delay, and movement disorders (Saitsu. 2016. PubMed ID: 25966631; Brunet. 2021. PubMed ID: 33619735; Evers. 2017. PubMed ID: 28688840; Kelly. 2019. PubMed ID: 30682224; Malaquias. 2019. PubMed ID: 31190250). This variant has not been reported in a large population database (http://gnomad.broadinstitute.org), indicating this variant is rare. This variant is interpreted as pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024