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NM_000448.3(RAG1):c.2659G>A (p.Asp887Asn) AND not provided

Germline classification:
Benign (2 submissions)
Last evaluated:
Sep 28, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003389782.11

Allele description [Variation Report for NM_000448.3(RAG1):c.2659G>A (p.Asp887Asn)]

NM_000448.3(RAG1):c.2659G>A (p.Asp887Asn)

Gene:
RAG1:recombination activating 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p12
Genomic location:
Preferred name:
NM_000448.3(RAG1):c.2659G>A (p.Asp887Asn)
HGVS:
  • NC_000011.10:g.36575963G>A
  • NG_007528.1:g.12951G>A
  • NM_000448.3:c.2659G>AMANE SELECT
  • NM_001377277.1:c.2659G>A
  • NM_001377278.1:c.2659G>A
  • NM_001377279.1:c.2659G>A
  • NM_001377280.1:c.2659G>A
  • NP_000439.1:p.Asp887Asn
  • NP_000439.2:p.Asp887Asn
  • NP_001364206.1:p.Asp887Asn
  • NP_001364207.1:p.Asp887Asn
  • NP_001364208.1:p.Asp887Asn
  • NP_001364209.1:p.Asp887Asn
  • LRG_98t1:c.2659G>A
  • LRG_98:g.12951G>A
  • LRG_98p1:p.Asp887Asn
  • NC_000011.9:g.36597513G>A
  • NM_000448.2:c.2659G>A
  • P15918:p.Asp887Asn
Protein change:
D887N
Links:
UniProtKB: P15918#VAR_029264; dbSNP: rs4151034
NCBI 1000 Genomes Browser:
rs4151034
Molecular consequence:
  • NM_000448.3:c.2659G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001377277.1:c.2659G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001377278.1:c.2659G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001377279.1:c.2659G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001377280.1:c.2659G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004130007CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Benign
(Apr 1, 2023)
germlineclinical testing

Citation Link,

SCV004562161ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2024)
Benign
(Sep 28, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From CeGaT Center for Human Genetics Tuebingen, SCV004130007.10

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

RAG1: BS1, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV004562161.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024