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NM_004006.3(DMD):c.9025C>A (p.Leu3009Ile) AND Cardiovascular phenotype

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 3, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003382718.2

Allele description [Variation Report for NM_004006.3(DMD):c.9025C>A (p.Leu3009Ile)]

NM_004006.3(DMD):c.9025C>A (p.Leu3009Ile)

Gene:
DMD:dystrophin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xp21.2
Genomic location:
Preferred name:
NM_004006.3(DMD):c.9025C>A (p.Leu3009Ile)
HGVS:
  • NC_000023.11:g.31444540G>T
  • NG_012232.1:g.1900070C>A
  • NM_000109.4:c.9001C>A
  • NM_004006.2:c.9025C>A
  • NM_004006.3:c.9025C>AMANE SELECT
  • NM_004009.3:c.9013C>A
  • NM_004010.3:c.8656C>A
  • NM_004011.4:c.5002C>A
  • NM_004012.4:c.4993C>A
  • NM_004013.3:c.1645C>A
  • NM_004014.3:c.838C>A
  • NM_004020.4:c.1645C>A
  • NM_004021.3:c.1645C>A
  • NM_004022.3:c.1645C>A
  • NM_004023.3:c.1645C>A
  • NP_000100.3:p.Leu3001Ile
  • NP_003997.2:p.Leu3009Ile
  • NP_004000.1:p.Leu3005Ile
  • NP_004001.1:p.Leu2886Ile
  • NP_004002.3:p.Leu1668Ile
  • NP_004003.2:p.Leu1665Ile
  • NP_004004.2:p.Leu549Ile
  • NP_004005.2:p.Leu280Ile
  • NP_004011.3:p.Leu549Ile
  • NP_004012.2:p.Leu549Ile
  • NP_004013.2:p.Leu549Ile
  • NP_004014.2:p.Leu549Ile
  • LRG_199t1:c.9025C>A
  • LRG_199:g.1900070C>A
  • NC_000023.10:g.31462657G>T
Protein change:
L1665I
Links:
dbSNP: rs2149075446
NCBI 1000 Genomes Browser:
rs2149075446
Molecular consequence:
  • NM_000109.4:c.9001C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004006.3:c.9025C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004009.3:c.9013C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004010.3:c.8656C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004011.4:c.5002C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004012.4:c.4993C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004013.3:c.1645C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004014.3:c.838C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004020.4:c.1645C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004021.3:c.1645C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004022.3:c.1645C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004023.3:c.1645C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004097122Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Jul 3, 2023) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV004097122.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.L3009I variant (also known as c.9025C>A), located in coding exon 60 of the DMD gene, results from a C to A substitution at nucleotide position 9025. The leucine at codon 3009 is replaced by isoleucine, an amino acid with highly similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024