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NM_000038.6(APC):c.7743T>A (p.Ser2581Arg) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 16, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003358454.2

Allele description [Variation Report for NM_000038.6(APC):c.7743T>A (p.Ser2581Arg)]

NM_000038.6(APC):c.7743T>A (p.Ser2581Arg)

Gene:
APC:APC regulator of WNT signaling pathway [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q22.2
Genomic location:
Preferred name:
NM_000038.6(APC):c.7743T>A (p.Ser2581Arg)
HGVS:
  • NC_000005.10:g.112843337T>A
  • NG_008481.4:g.155817T>A
  • NM_000038.6:c.7743T>AMANE SELECT
  • NM_001127510.3:c.7743T>A
  • NM_001127511.3:c.7689T>A
  • NM_001354895.2:c.7743T>A
  • NM_001354896.2:c.7797T>A
  • NM_001354897.2:c.7773T>A
  • NM_001354898.2:c.7668T>A
  • NM_001354899.2:c.7659T>A
  • NM_001354900.2:c.7620T>A
  • NM_001354901.2:c.7566T>A
  • NM_001354902.2:c.7470T>A
  • NM_001354903.2:c.7440T>A
  • NM_001354904.2:c.7365T>A
  • NM_001354905.2:c.7263T>A
  • NM_001354906.2:c.6894T>A
  • NM_001407446.1:c.7827T>A
  • NM_001407447.1:c.7797T>A
  • NM_001407448.1:c.7797T>A
  • NM_001407449.1:c.7797T>A
  • NM_001407450.1:c.7743T>A
  • NM_001407451.1:c.7722T>A
  • NM_001407452.1:c.7713T>A
  • NM_001407453.1:c.7566T>A
  • NM_001407454.1:c.7494T>A
  • NM_001407455.1:c.7494T>A
  • NM_001407456.1:c.7494T>A
  • NM_001407457.1:c.7494T>A
  • NM_001407458.1:c.7440T>A
  • NM_001407459.1:c.7440T>A
  • NM_001407460.1:c.7440T>A
  • NM_001407467.1:c.7356T>A
  • NM_001407469.1:c.7356T>A
  • NM_001407470.1:c.6894T>A
  • NM_001407471.1:c.6591T>A
  • NM_001407472.1:c.6591T>A
  • NP_000029.2:p.Ser2581Arg
  • NP_000029.2:p.Ser2581Arg
  • NP_001120982.1:p.Ser2581Arg
  • NP_001120982.1:p.Ser2581Arg
  • NP_001120983.1:p.Ser2581Arg
  • NP_001120983.2:p.Ser2563Arg
  • NP_001341824.1:p.Ser2581Arg
  • NP_001341825.1:p.Ser2599Arg
  • NP_001341826.1:p.Ser2591Arg
  • NP_001341827.1:p.Ser2556Arg
  • NP_001341828.1:p.Ser2553Arg
  • NP_001341829.1:p.Ser2540Arg
  • NP_001341830.1:p.Ser2522Arg
  • NP_001341831.1:p.Ser2490Arg
  • NP_001341832.1:p.Ser2480Arg
  • NP_001341833.1:p.Ser2455Arg
  • NP_001341834.1:p.Ser2421Arg
  • NP_001341835.1:p.Ser2298Arg
  • NP_001394375.1:p.Ser2609Arg
  • NP_001394376.1:p.Ser2599Arg
  • NP_001394377.1:p.Ser2599Arg
  • NP_001394378.1:p.Ser2599Arg
  • NP_001394379.1:p.Ser2581Arg
  • NP_001394380.1:p.Ser2574Arg
  • NP_001394381.1:p.Ser2571Arg
  • NP_001394382.1:p.Ser2522Arg
  • NP_001394383.1:p.Ser2498Arg
  • NP_001394384.1:p.Ser2498Arg
  • NP_001394385.1:p.Ser2498Arg
  • NP_001394386.1:p.Ser2498Arg
  • NP_001394387.1:p.Ser2480Arg
  • NP_001394388.1:p.Ser2480Arg
  • NP_001394389.1:p.Ser2480Arg
  • NP_001394396.1:p.Ser2452Arg
  • NP_001394398.1:p.Ser2452Arg
  • NP_001394399.1:p.Ser2298Arg
  • NP_001394400.1:p.Ser2197Arg
  • NP_001394401.1:p.Ser2197Arg
  • LRG_130t1:c.7743T>A
  • LRG_130t2:c.7743T>A
  • LRG_130t3:c.7743T>A
  • LRG_130:g.155817T>A
  • LRG_130p1:p.Ser2581Arg
  • LRG_130p2:p.Ser2581Arg
  • LRG_130p3:p.Ser2581Arg
  • NC_000005.9:g.112179034T>A
  • NM_000038.4:c.7743T>A
  • NM_000038.5:c.7743T>A
  • NM_001127510.1:c.7743T>A
  • NM_001127511.1:c.7743T>A
  • NR_176365.1:n.7578T>A
  • NR_176366.1:n.7997T>A
Protein change:
S2197R
Molecular consequence:
  • NM_000038.6:c.7743T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127510.3:c.7743T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127511.3:c.7689T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354895.2:c.7743T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354896.2:c.7797T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354897.2:c.7773T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354898.2:c.7668T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354899.2:c.7659T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354900.2:c.7620T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354901.2:c.7566T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354902.2:c.7470T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354903.2:c.7440T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354904.2:c.7365T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354905.2:c.7263T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354906.2:c.6894T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407446.1:c.7827T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407447.1:c.7797T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407448.1:c.7797T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407449.1:c.7797T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407450.1:c.7743T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407451.1:c.7722T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407452.1:c.7713T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407453.1:c.7566T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407454.1:c.7494T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407455.1:c.7494T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407456.1:c.7494T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407457.1:c.7494T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407458.1:c.7440T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407459.1:c.7440T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407460.1:c.7440T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407467.1:c.7356T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407469.1:c.7356T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407470.1:c.6894T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407471.1:c.6591T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407472.1:c.6591T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_176365.1:n.7578T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176366.1:n.7997T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004053862Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Jun 16, 2023) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV004053862.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.S2581R variant (also known as c.7743T>A), located in coding exon 15 of the APC gene, results from a T to A substitution at nucleotide position 7743. The serine at codon 2581 is replaced by arginine, an amino acid with dissimilar properties. This amino acid position is conserved. In addition, in silico predictors for this gene do not accurately predict pathogenicity. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024