U.S. flag

An official website of the United States government

NM_000251.3(MSH2):c.897T>A (p.Tyr299Ter) AND Hereditary cancer-predisposing syndrome

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jul 28, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003350730.2

Allele description [Variation Report for NM_000251.3(MSH2):c.897T>A (p.Tyr299Ter)]

NM_000251.3(MSH2):c.897T>A (p.Tyr299Ter)

Gene:
MSH2:mutS homolog 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p21
Genomic location:
Preferred name:
NM_000251.3(MSH2):c.897T>A (p.Tyr299Ter)
HGVS:
  • NC_000002.12:g.47414373T>A
  • NG_007110.2:g.16250T>A
  • NM_000251.3:c.897T>AMANE SELECT
  • NM_001258281.1:c.699T>A
  • NM_001406631.1:c.897T>A
  • NM_001406632.1:c.897T>A
  • NM_001406633.1:c.897T>A
  • NM_001406634.1:c.897T>A
  • NM_001406635.1:c.897T>A
  • NM_001406636.1:c.864T>A
  • NM_001406637.1:c.897T>A
  • NM_001406638.1:c.897T>A
  • NM_001406639.1:c.897T>A
  • NM_001406640.1:c.897T>A
  • NM_001406641.1:c.897T>A
  • NM_001406642.1:c.897T>A
  • NM_001406643.1:c.897T>A
  • NM_001406644.1:c.897T>A
  • NM_001406645.1:c.897T>A
  • NM_001406646.1:c.897T>A
  • NM_001406647.1:c.792+1813T>A
  • NM_001406648.1:c.897T>A
  • NM_001406649.1:c.792+1813T>A
  • NM_001406650.1:c.792+1813T>A
  • NM_001406651.1:c.792+1813T>A
  • NM_001406652.1:c.792+1813T>A
  • NM_001406653.1:c.837T>A
  • NM_001406654.1:c.477T>A
  • NM_001406655.1:c.897T>A
  • NM_001406656.1:c.-1T>A
  • NM_001406657.1:c.897T>A
  • NM_001406658.1:c.-527+1813T>A
  • NM_001406659.1:c.-572T>A
  • NM_001406660.1:c.-769T>A
  • NM_001406661.1:c.-724T>A
  • NM_001406662.1:c.-641T>A
  • NM_001406666.1:c.897T>A
  • NM_001406669.1:c.-572T>A
  • NM_001406672.1:c.792+1813T>A
  • NM_001406674.1:c.897T>A
  • NP_000242.1:p.Tyr299Ter
  • NP_000242.1:p.Tyr299Ter
  • NP_001245210.1:p.Tyr233Ter
  • NP_001393560.1:p.Tyr299Ter
  • NP_001393561.1:p.Tyr299Ter
  • NP_001393562.1:p.Tyr299Ter
  • NP_001393563.1:p.Tyr299Ter
  • NP_001393564.1:p.Tyr299Ter
  • NP_001393565.1:p.Tyr288Ter
  • NP_001393566.1:p.Tyr299Ter
  • NP_001393567.1:p.Tyr299Ter
  • NP_001393568.1:p.Tyr299Ter
  • NP_001393569.1:p.Tyr299Ter
  • NP_001393570.1:p.Tyr299Ter
  • NP_001393571.1:p.Tyr299Ter
  • NP_001393572.1:p.Tyr299Ter
  • NP_001393573.1:p.Tyr299Ter
  • NP_001393574.1:p.Tyr299Ter
  • NP_001393575.1:p.Tyr299Ter
  • NP_001393577.1:p.Tyr299Ter
  • NP_001393582.1:p.Tyr279Ter
  • NP_001393583.1:p.Tyr159Ter
  • NP_001393584.1:p.Tyr299Ter
  • NP_001393586.1:p.Tyr299Ter
  • NP_001393595.1:p.Tyr299Ter
  • NP_001393603.1:p.Tyr299Ter
  • LRG_218t1:c.897T>A
  • LRG_218:g.16250T>A
  • LRG_218p1:p.Tyr299Ter
  • NC_000002.11:g.47641512T>A
  • NM_000251.1:c.897T>A
  • NM_000251.2:c.897T>A
  • NR_176230.1:n.933T>A
  • NR_176231.1:n.933T>A
  • NR_176232.1:n.933T>A
  • NR_176234.1:n.933T>A
  • NR_176235.1:n.933T>A
  • NR_176236.1:n.933T>A
  • NR_176237.1:n.933T>A
  • NR_176238.1:n.933T>A
  • NR_176239.1:n.933T>A
  • NR_176240.1:n.933T>A
  • NR_176241.1:n.933T>A
  • NR_176242.1:n.933T>A
  • NR_176244.1:n.933T>A
  • NR_176245.1:n.933T>A
  • NR_176246.1:n.933T>A
  • NR_176247.1:n.933T>A
  • NR_176248.1:n.933T>A
  • NR_176249.1:n.933T>A
Protein change:
Y159*
Molecular consequence:
  • NM_001406656.1:c.-1T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001406659.1:c.-572T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001406660.1:c.-769T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001406661.1:c.-724T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001406662.1:c.-641T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001406669.1:c.-572T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001406647.1:c.792+1813T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406649.1:c.792+1813T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406650.1:c.792+1813T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406651.1:c.792+1813T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406652.1:c.792+1813T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406658.1:c.-527+1813T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406672.1:c.792+1813T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NR_176230.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176231.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176232.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176234.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176235.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176236.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176237.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176238.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176239.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176240.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176241.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176242.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176244.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176245.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176246.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176247.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176248.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176249.1:n.933T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_000251.3:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001258281.1:c.699T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406631.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406632.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406633.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406634.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406635.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406636.1:c.864T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406637.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406638.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406639.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406640.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406641.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406642.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406643.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406644.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406645.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406646.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406648.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406653.1:c.837T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406654.1:c.477T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406655.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406657.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406666.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001406674.1:c.897T>A - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004055872Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Pathogenic
(Jul 28, 2023) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV004055872.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.Y299* pathogenic mutation (also known as c.897T>A), located in coding exon 5 of the MSH2 gene, results from a T to A substitution at nucleotide position 897. This changes the amino acid from a tyrosine to a stop codon within coding exon 5. This alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. As such, this alteration is interpreted as a disease-causing mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 9, 2024