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NM_004415.4(DSP):c.1273C>T (p.Arg425Ter) AND Familial isolated arrhythmogenic right ventricular dysplasia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 28, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003330410.1

Allele description [Variation Report for NM_004415.4(DSP):c.1273C>T (p.Arg425Ter)]

NM_004415.4(DSP):c.1273C>T (p.Arg425Ter)

Gene:
DSP:desmoplakin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p24.3
Genomic location:
Preferred name:
NM_004415.4(DSP):c.1273C>T (p.Arg425Ter)
HGVS:
  • NC_000006.12:g.7568443C>T
  • NG_008803.1:g.31807C>T
  • NM_001008844.3:c.1273C>T
  • NM_001319034.2:c.1273C>T
  • NM_004415.4:c.1273C>TMANE SELECT
  • NP_001008844.1:p.Arg425Ter
  • NP_001305963.1:p.Arg425Ter
  • NP_004406.2:p.Arg425Ter
  • LRG_423t1:c.1273C>T
  • LRG_423:g.31807C>T
  • NC_000006.11:g.7568676C>T
  • NM_004415.2:c.1273C>T
  • NM_004415.3:c.1273C>T
  • c.1273C>T
  • p.Arg425X
  • p.R425*
Protein change:
R425*
Links:
dbSNP: rs397516915
NCBI 1000 Genomes Browser:
rs397516915
Molecular consequence:
  • NM_001008844.3:c.1273C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001319034.2:c.1273C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_004415.4:c.1273C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Familial isolated arrhythmogenic right ventricular dysplasia
Identifiers:
MONDO: MONDO:0016342; MedGen: C4274968; OMIM: PS107970

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004037639Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Pathogenic
(Aug 28, 2023)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Pediatric cardiomyopathy: importance of genetic and metabolic evaluation.

Kindel SJ, Miller EM, Gupta R, Cripe LH, Hinton RB, Spicer RL, Towbin JA, Ware SM.

J Card Fail. 2012 May;18(5):396-403. doi: 10.1016/j.cardfail.2012.01.017. Epub 2012 Mar 10.

PubMed [citation]
PMID:
22555271
PMCID:
PMC3345128

Molecular genetics in 4408 cardiomyopathy probands and 3008 relatives in Norway: 17 years of genetic testing in a national laboratory.

Stava TT, Leren TP, Bogsrud MP.

Eur J Prev Cardiol. 2022 Oct 18;29(13):1789-1799. doi: 10.1093/eurjpc/zwac102.

PubMed [citation]
PMID:
35653365
See all PubMed Citations (3)

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV004037639.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

Variant summary: DSP c.1273C>T (p.Arg425X) results in a premature termination codon, predicted to cause a truncation of the encoded protein or absence of the protein due to nonsense mediated decay, which are commonly known mechanisms for disease. Variants downstream of this position have been classified as pathogenic by our laboratory. The variant allele was found at a frequency of 4e-06 in 251268 control chromosomes (gnomAD). c.1273C>T has been reported in the literature in individuals affected with Arrhythmogenic Right Ventricular Dysplasia/Cardiomyopathy (Kindel_2012, Protonotarios_2022). These data indicate that the variant may be associated with disease. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. The following publications have been ascertained in the context of this evaluation (PMID: 22555271, 35766183, 35653365). Seven submitters have cited clinical-significance assessments for this variant to ClinVar after 2014. All submitters classified the variant as pathogenic (n=3) and likely pathogenic (n=4). Based on the evidence outlined above, the variant was classified as pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 11, 2024