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NM_007373.4(SHOC2):c.4A>G (p.Ser2Gly) AND multiple conditions

Germline classification:
Pathogenic (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003330311.2

Allele description [Variation Report for NM_007373.4(SHOC2):c.4A>G (p.Ser2Gly)]

NM_007373.4(SHOC2):c.4A>G (p.Ser2Gly)

Gene:
SHOC2:SHOC2 leucine rich repeat scaffold protein [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q25.2
Genomic location:
Preferred name:
NM_007373.4(SHOC2):c.4A>G (p.Ser2Gly)
Other names:
p.S2G:AGT>GGT; NM_007373.3(SHOC2):c.4A>G
HGVS:
  • NC_000010.11:g.110964362A>G
  • NG_028922.1:g.49820A>G
  • NM_001269039.3:c.4A>G
  • NM_001324336.2:c.4A>G
  • NM_001324337.2:c.4A>G
  • NM_007373.4:c.4A>GMANE SELECT
  • NP_001255968.1:p.Ser2Gly
  • NP_001311265.1:p.Ser2Gly
  • NP_001311266.1:p.Ser2Gly
  • NP_001311266.1:p.Ser2Gly
  • NP_031399.2:p.Ser2Gly
  • NP_031399.2:p.Ser2Gly
  • LRG_753t1:c.4A>G
  • LRG_753:g.49820A>G
  • LRG_753p1:p.Ser2Gly
  • NC_000010.10:g.112724120A>G
  • NM_001269039.1:c.4A>G
  • NM_001269039.2:c.4A>G
  • NM_001324337.1:c.4A>G
  • NM_007373.3:c.4A>G
  • Q9UQ13:p.Ser2Gly
  • c.4A>G
Protein change:
S2G; SER2GLY
Links:
UniProtKB: Q9UQ13#VAR_060199; OMIM: 602775.0001; dbSNP: rs267607048
NCBI 1000 Genomes Browser:
rs267607048
Molecular consequence:
  • NM_001269039.3:c.4A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001324336.2:c.4A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001324337.2:c.4A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_007373.4:c.4A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Pectus excavatum
Synonyms:
funnel chest
Identifiers:
MONDO: MONDO:0008213; MedGen: C2051831; OMIM: 169300; Human Phenotype Ontology: HP:0000767
Name:
Noonan syndrome-like disorder with loose anagen hair 1 (NSLH1)
Synonyms:
TOSTI SYNDROME; MAZZANTI SYNDROME
Identifiers:
MONDO: MONDO:0054637; MedGen: C4478716; Orphanet: 2701; OMIM: 607721

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004037443Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenicgermlinenot provided

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providednot provided

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin, SCV004037443.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024