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NM_006941.4(SOX10):c.481C>T (p.Arg161Cys) AND multiple conditions

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Aug 25, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003328487.4

Allele description [Variation Report for NM_006941.4(SOX10):c.481C>T (p.Arg161Cys)]

NM_006941.4(SOX10):c.481C>T (p.Arg161Cys)

Genes:
POLR2F:RNA polymerase II, I and III subunit F [Gene - OMIM - HGNC]
SOX10:SRY-box transcription factor 10 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q13.1
Genomic location:
Preferred name:
NM_006941.4(SOX10):c.481C>T (p.Arg161Cys)
HGVS:
  • NC_000022.11:g.37978083G>A
  • NG_007948.1:g.11450C>T
  • NM_001301130.2:c.294-8071G>A
  • NM_001301131.2:c.293+10913G>A
  • NM_001363825.1:c.*38+5773G>A
  • NM_006941.4:c.481C>TMANE SELECT
  • NP_008872.1:p.Arg161Cys
  • NP_008872.1:p.Arg161Cys
  • LRG_271t1:c.481C>T
  • LRG_271:g.11450C>T
  • LRG_271p1:p.Arg161Cys
  • NC_000022.10:g.38374090G>A
  • NM_006941.3:c.481C>T
Protein change:
R161C
Links:
dbSNP: rs2145768544
NCBI 1000 Genomes Browser:
rs2145768544
Molecular consequence:
  • NM_001301130.2:c.294-8071G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001301131.2:c.293+10913G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001363825.1:c.*38+5773G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_006941.4:c.481C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
PCWH syndrome
Synonyms:
WAARDENBURG-SHAH SYNDROME, NEUROLOGIC VARIANT; Peripheral demyelinating neuropathy, central dysmyelination, Waardenburg syndrome, and Hirschsprung disease
Identifiers:
MONDO: MONDO:0012198; MedGen: C1836727; Orphanet: 163746; OMIM: 609136
Name:
Waardenburg syndrome type 2E (WS2E)
Synonyms:
WAARDENBURG SYNDROME, TYPE 2E, WITH OR WITHOUT NEUROLOGIC INVOLVEMENT; WS2E, WITH OR WITHOUT NEUROLOGIC INVOLVEMENT; HYPOGONADOTROPIC HYPOGONADISM WITH ANOSMIA AND DEAFNESS, WITH OR WITHOUT HYPOPIGMENTATION
Identifiers:
MONDO: MONDO:0012698; MedGen: C2700405; Orphanet: 3440; OMIM: 611584
Name:
Waardenburg syndrome type 4C (WS4C)
Synonyms:
WAARDENBURG SYNDROME WITH HIRSCHSPRUNG DISEASE, TYPE 4C
Identifiers:
MONDO: MONDO:0013202; MedGen: C2750452; Orphanet: 897; OMIM: 613266

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004035172HudsonAlpha Institute for Biotechnology, HudsonAlpha Institute for Biotechnology - HudsonAlpha-AGHI-WGS
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Aug 25, 2023)
maternalresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedmaternalyes1not providednot provided1not providedresearch

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From HudsonAlpha Institute for Biotechnology, HudsonAlpha Institute for Biotechnology - HudsonAlpha-AGHI-WGS, SCV004035172.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalyes1not providednot provided1not providednot providednot provided

Last Updated: Nov 10, 2024