NM_000051.4(ATM):c.7826T>C (p.Ile2609Thr) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jul 19, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003317161.8

Allele description [Variation Report for NM_000051.4(ATM):c.7826T>C (p.Ile2609Thr)]

NM_000051.4(ATM):c.7826T>C (p.Ile2609Thr)

Genes:

ATM:ATM serine/threonine kinase [Gene - OMIM - HGNC]
C11orf65:chromosome 11 open reading frame 65 [Gene - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

11q22.3

Genomic location:

Preferred name:

NM_000051.4(ATM):c.7826T>C (p.Ile2609Thr)

HGVS:

NC_000011.10:g.108332799T>C
NG_009830.1:g.114968T>C
NG_054724.1:g.142034A>G
NM_000051.4:c.7826T>CMANE SELECT
NM_001330368.2:c.641-23728A>G
NM_001351110.2:c.*38+2421A>G
NM_001351834.2:c.7826T>C
NP_000042.3:p.Ile2609Thr
NP_000042.3:p.Ile2609Thr
NP_001338763.1:p.Ile2609Thr
LRG_135t1:c.7826T>C
LRG_135:g.114968T>C
LRG_135p1:p.Ile2609Thr
NC_000011.9:g.108203526T>C
NM_000051.3:c.7826T>C

Protein change:

I2609T

Links:

dbSNP: rs369846067

NCBI 1000 Genomes Browser:

rs369846067

Molecular consequence:

NM_001330368.2:c.641-23728A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001351110.2:c.*38+2421A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_000051.4:c.7826T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001351834.2:c.7826T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004021517	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Uncertain significance (Jul 19, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004021517

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Uncertain significance
(Jul 19, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV004021517.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Not observed at a significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; Has not been previously published as pathogenic or benign to our knowledge; This variant is associated with the following publications: (PMID: 27535533)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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