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NM_000460.4(THPO):c.469C>T (p.Arg157Ter) AND Thrombocytopenia

Germline classification:
Pathogenic (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003314013.4

Allele description [Variation Report for NM_000460.4(THPO):c.469C>T (p.Arg157Ter)]

NM_000460.4(THPO):c.469C>T (p.Arg157Ter)

Gene:
THPO:thrombopoietin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q27.1
Genomic location:
Preferred name:
NM_000460.4(THPO):c.469C>T (p.Arg157Ter)
HGVS:
  • NC_000003.12:g.184373106G>A
  • NG_012136.1:g.10039C>T
  • NM_000460.4:c.469C>TMANE SELECT
  • NM_001177597.2:c.457C>T
  • NM_001177598.2:c.452C>T
  • NM_001289997.1:c.469C>T
  • NM_001289998.1:c.469C>T
  • NM_001290003.1:c.889C>T
  • NM_001290022.1:c.457C>T
  • NM_001290026.1:c.452C>T
  • NM_001290027.1:c.469C>T
  • NM_001290028.1:c.469C>T
  • NP_000451.1:p.Arg157Ter
  • NP_001171068.1:p.Arg153Ter
  • NP_001171069.1:p.Pro151Leu
  • NP_001276926.1:p.Arg157Ter
  • NP_001276927.1:p.Arg157Ter
  • NP_001276932.1:p.Arg297Ter
  • NP_001276951.1:p.Arg153Ter
  • NP_001276955.1:p.Pro151Leu
  • NP_001276956.1:p.Arg157Ter
  • NP_001276957.1:p.Arg157Ter
  • LRG_580t1:c.469C>T
  • LRG_580:g.10039C>T
  • LRG_580p1:p.Arg157Ter
  • NC_000003.11:g.184090894G>A
Protein change:
P151L; ARG157TER
Links:
OMIM: 600044.0010; dbSNP: rs1412486198
NCBI 1000 Genomes Browser:
rs1412486198
Molecular consequence:
  • NM_001177598.2:c.452C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001290026.1:c.452C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_000460.4:c.469C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001177597.2:c.457C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001289997.1:c.469C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001289998.1:c.469C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001290003.1:c.889C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001290022.1:c.457C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001290027.1:c.469C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001290028.1:c.469C>T - nonsense - [Sequence Ontology: SO:0001587]
Observations:
4

Condition(s)

Name:
Thrombocytopenia
Identifiers:
MONDO: MONDO:0002049; MeSH: D013921; MedGen: C0040034; Human Phenotype Ontology: HP:0001873

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004014038ISTH-SSC Genomics in Thrombosis and Hemostasis, KU Leuven, Center for Molecular and Vascular Biology
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenicgermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes4not providednot provided4not providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From ISTH-SSC Genomics in Thrombosis and Hemostasis, KU Leuven, Center for Molecular and Vascular Biology, SCV004014038.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
2not provided1not providednot providedclinical testing PubMed (1)
3not provided1not providednot providedclinical testing PubMed (1)
4not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided
2germlineyes1not providednot provided1not providednot providednot provided
3germlineyes1not providednot provided1not providednot providednot provided
4germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Oct 20, 2024